remove arranger (#743)

uc-cdis · Oct 5, 2020 · 63e87dd · 63e87dd
1 parent 08f94f1
commit 63e87dd
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diff --git a/.eslintrc.js b/.eslintrc.js
@@ -102,12 +102,6 @@ module.exports = {
         "no-loop-func": "off" // for D3 config
       }
     },
-    {
-      "files": [ "src/Explorer/ExplorerTable.jsx" ],
-      "rules": {
-        "jsx-a11y/anchor-is-valid": "off" // for relative links
-      }
-    },
     {
       "files": [ "src/QueryNode/QueryForm.jsx" ],
       "rules": {

diff --git a/Dockerfile b/Dockerfile
@@ -5,7 +5,6 @@ FROM ubuntu:18.04
 
 ENV DEBIAN_FRONTEND=noninteractive
 ENV REACT_APP_PROJECT_ID=search
-ENV REACT_APP_ARRANGER_API=/api/v0/flat-search
 
 RUN apt-get update && apt-get install -y --no-install-recommends \
     build-essential \

diff --git a/README.md b/README.md
@@ -78,30 +78,6 @@ deploy-time configuration.  The `GEN3_BUNDLE` environment variable determines wh
 To run Storybook:
 `npm run storybook`
 
-
-To run with Arranger components *(DEPRECATED: we use Guppy powered explorer page and stop maintaining arranger powered version.)*:
-1. Set local environment variables:
-  - $STORYBOOK_ARRANGER_API: localhost:3000
-  - $STORYBOOK_PROJECT_ID: search
-  - $REACT_APP_ARRANGER_API: /api/v0/flat-search
-  - $REACT_APP_PROJECT_ID: search
-2. Run ElasticSearch at localhost:9200
-3. Clone and `cd` into `gen3-arranger`. Run:
-```cd Docker/Stacks
-docker-compose -f esearch.yml up -d
-export ESHOST=localhost:9200
-source esearch/indexSetup.sh
-es_indices
-es_delete_all
-es_setup_index
-es_gen_data 0 20
-```
-4. Follow the [Arranger](https://github.com/overture-stack/arranger) setup steps - run the server and the dashboard.
-5. At the Arranger Dashboard (localhost:6060), add a new version called 'dev'.
-6. Click on 'dev' and add a new index. Name: subject, Index: gen3-dev-subject, ES Type: subject.
-7. Go back to Versions and hit the lightning bolt. The endpoint should go from a red arrow to a green arrow.
-8. At this point, running the Data Portal from our Storybook should work.
-
 ### Run Windmill using Docker
 Build the container image first
 ```

diff --git a/data/config/anvil.json b/data/config/anvil.json
@@ -144,12 +144,6 @@
         }
       ]
     },
-    "arrangerConfig": {
-      "projectId": "search",
-      "graphqlField": "case",
-      "index": "",
-      "nodeCountField": "node_id"
-    },
     "table": {
       "enabled": true
     },

diff --git a/data/config/bhc.json b/data/config/bhc.json
@@ -205,12 +205,6 @@
         "experimental_group"
       ]
     },
-    "arrangerConfig": {
-      "projectId": "search",
-      "graphqlField": "case",
-      "index": "",
-      "nodeCountField": "node_id"
-    },
   "guppyConfig": {
       "dataType": "case",
       "nodeCountTitle": "Cases",

diff --git a/data/config/default.json b/data/config/default.json
@@ -188,12 +188,6 @@
     "analysis": false
   },
   "dataExplorerConfig": {
-    "arrangerConfig": {
-      "projectId": "search",
-      "graphqlField": "subject",
-      "index": "",
-      "nodeCountField": "node_id"
-    },
     "charts": {
       "project": {
         "chartType": "count",

diff --git a/data/config/gtex.json b/data/config/gtex.json
@@ -290,18 +290,6 @@
         "dropdownId": "export"
       }
     ],
-    "arrangerConfig": {
-      "projectId": "search",
-      "graphqlField": "subject",
-      "index": "",
-      "manifestMapping": {
-        "resourceIndexType": "file",
-        "resourceIdField": "object_id",
-        "referenceIdFieldInResourceIndex": "subject_id",
-        "referenceIdFieldInDataIndex": "subject_id"
-      },
-      "nodeCountField": "subject_id"
-    },
     "guppyConfig": {
       "dataType": "subject",
       "nodeCountTitle": "Subjects",
@@ -344,7 +332,7 @@
     },
     "getAccessButtonLink": "https://dbgap.ncbi.nlm.nih.gov/",
     "terraExportURL": "https://bvdp-saturn-dev.appspot.com/#import-data",
-    "terraTemplate": [ 
+    "terraTemplate": [
       "bdc",
       "gen3"
     ]
@@ -417,4 +405,4 @@
     ],
     "dropdowns": {}
   }
-}
+}
diff --git a/data/config/kfDcfInterop.json b/data/config/kfDcfInterop.json
@@ -155,12 +155,6 @@
         }
       ]
     },
-    "arrangerConfig": {
-      "projectId": "search",
-      "graphqlField": "case",
-      "index": "",
-      "nodeCountField": "node_id"
-    },
     "table": {
       "enabled": true
     },

diff --git a/data/config/ncrdc-demo.json b/data/config/ncrdc-demo.json
@@ -174,12 +174,6 @@
         "rightIcon": "download",
         "fileName": "manifest.json"
       }
-    ],
-    "arrangerConfig": {
-      "projectId": "search",
-      "graphqlField": "subject",
-      "index": "",
-      "nodeCountField": "node_id"
-    }
+    ]
   }
 }
diff --git a/data/config/va.json b/data/config/va.json
@@ -219,19 +219,6 @@
     ],
     "table": {
       "enabled": true
-    },
-    "arrangerConfig": {
-      "projectId": "search",
-      "graphqlField": "patients",
-      "index": "",
-      "nodeCountField": "Chicago_ID",
-      "manifestMapping": {
-        "resourceIndexType": "file",
-        "resourceIdField": "object_id",
-        "referenceIdFieldInResourceIndex": "case_id",
-        "referenceIdFieldInDataIndex": "object_id",
-        "divideKey": "data_type"
-      }
     }
   }
 }