Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Use Spatialdata IO to Read Visium #137

Merged
merged 2 commits into from
Jan 25, 2024
Merged

Conversation

jeffquinn-msk
Copy link
Contributor

Implementing our own Visium reader has some problems. The scverse spatialdata_io package has a loader that seems pretty robust to the different versions of the spaceranger pipeline, lets try and use that to see if it works better for users

@jeffquinn-msk jeffquinn-msk merged commit 2308285 into main Jan 25, 2024
3 checks passed
@jeffquinn-msk jeffquinn-msk deleted the jq_improve_visium_loading branch January 25, 2024 22:01
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant