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Sherbrooke Connectivity Imaging Lab

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI.
README.md

Sherbrooke Connectivity Imaging Laboratory

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications.

Useful links:

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  1. scilpy scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    Python 65 62

  2. tractoflow tractoflow Public

    TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

    Nextflow 54 23

  3. scil-documentation scil-documentation Public

    Documentation for the SCIL

    Python 4 16

Repositories

Showing 10 of 58 repositories
  • nf-pediatric Public

    nf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

    scilus/nf-pediatric’s past year of commit activity
    Nextflow 3 MIT 1 2 1 Updated Mar 4, 2025
  • nf-tractoflow Public
    scilus/nf-tractoflow’s past year of commit activity
    Nextflow 0 MIT 2 1 1 Updated Mar 3, 2025
  • nf-neuro Public

    nf-neuro is a nextflow neuroimaging library maintained by the SCIL team

    scilus/nf-neuro’s past year of commit activity
    Nextflow 9 GPL-3.0 16 16 9 Updated Mar 3, 2025
  • nf-neuro-documentation Public
    scilus/nf-neuro-documentation’s past year of commit activity
    MDX 1 MIT 3 5 0 Updated Mar 3, 2025
  • neurogister Public
    scilus/neurogister’s past year of commit activity
    Python 1 1 0 0 Updated Feb 25, 2025
  • tractometry_flow Public
    scilus/tractometry_flow’s past year of commit activity
    Nextflow 0 12 1 0 Updated Feb 21, 2025
  • scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    scilus/scilpy’s past year of commit activity
    Python 65 62 37 16 Updated Feb 17, 2025
  • quactography Public
    scilus/quactography’s past year of commit activity
    Python 1 Apache-2.0 7 0 2 Updated Feb 13, 2025
  • containers-scilus Public

    Files needed to build a container to run all scilus flows.

    scilus/containers-scilus’s past year of commit activity
    Dockerfile 2 4 2 2 Updated Jan 29, 2025
  • mrds_flow Public
    scilus/mrds_flow’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Jan 28, 2025
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