Skip to content

@scilus Sherbrooke Connectivity Imaging Lab

Change the repository type filter

All

    Repositories list

    58 repositories

    • nf-pediatric

      Public
      nf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.
      Nextflow
      •
      MIT License
      •1•3•2•1•Updated Mar 4, 2025Mar 4, 2025

    • nf-tractoflow

      Public
      Nextflow
      •
      MIT License
      •2•0•1•1•Updated Mar 3, 2025Mar 3, 2025

    • nf-neuro

      Public
      nf-neuro is a nextflow neuroimaging library maintained by the SCIL team
      libraryneuroimagingnextflow-modules
      Nextflow
      •
      GNU General Public License v3.0
      •16•9•16•9•Updated Mar 3, 2025Mar 3, 2025

    • nf-neuro-documentation

      Public
      MDX
      •
      MIT License
      •3•1•5•0•Updated Mar 3, 2025Mar 3, 2025

    • neurogister

      Public
      Python
      •1•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • tractometry_flow

      Public
      Nextflow
      •12•0•1•0•Updated Feb 21, 2025Feb 21, 2025

    • scilpy

      Public
      The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
      Python
      •
      Other
      •62•65•37•16•Updated Feb 17, 2025Feb 17, 2025

    • quactography

      Public
      Python
      •
      Apache License 2.0
      •7•1•0•2•Updated Feb 13, 2025Feb 13, 2025

    • containers-scilus

      Public
      Files needed to build a container to run all scilus flows.
      Dockerfile
      •4•2•2•2•Updated Jan 29, 2025Jan 29, 2025

    • mrds_flow

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • scil-documentation

      Public
      Documentation for the SCIL
      Python
      •16•4•8•3•Updated Jan 23, 2025Jan 23, 2025

    • nf-mouse_flow

      Public
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • noddi_flow

      Public
      Nextflow
      •
      MIT License
      •1•0•0•1•Updated Jan 6, 2025Jan 6, 2025

    • disconets_flow

      Public
      Nextflow
      •2•0•1•0•Updated Dec 19, 2024Dec 19, 2024

    • scilus_website

      Public
      SCIL website
      HTML
      •
      MIT License
      •6•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • mouseflow_documentation

      Public
      Python
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • teaching

      Public
      Python
      •1•0•0•1•Updated Dec 5, 2024Dec 5, 2024

    • Infant-DWI

      Public
      Complete pipeline to perform tractography from infant diffusion MRI data.
      Nextflow
      •
      MIT License
      •2•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • combine_flows

      Public
      Shell
      •6•0•1•2•Updated Nov 6, 2024Nov 6, 2024

    • dmriqcpy

      Public
      Diffusion MRI Quality Check in python
      JavaScript
      •
      MIT License
      •9•8•3•2•Updated Nov 4, 2024Nov 4, 2024

    • rbx_flow

      Public
      Nextflow
      •
      MIT License
      •9•2•0•0•Updated Nov 2, 2024Nov 2, 2024

    • tractoflow

      Public
      TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
      Nextflow
      •
      Other
      •23•54•7•1•Updated Sep 23, 2024Sep 23, 2024

    • nf-scil

      Public
      SCIL Nextflow Toolbox
      Nextflow
      •
      GNU General Public License v3.0
      •16•1•6•5•Updated Sep 16, 2024Sep 16, 2024

    • freewater_flow

      Public
      Nextflow
      •
      MIT License
      •5•6•1•0•Updated Sep 12, 2024Sep 12, 2024

    • nft-nifti

      Public
      Java
      •
      MIT License
      •3•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • bst_flow

      Public
      Bundle Specific Tractography pipeline
      Nextflow
      •
      MIT License
      •3•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • freesurfer_flow

      Public
      Nextflow
      •
      MIT License
      •3•0•1•1•Updated Jul 8, 2024Jul 8, 2024

    • .github

      Public
      0•0•0•0•Updated May 17, 2024May 17, 2024

    • atlas_arnold

      Public
      Shell
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 15, 2024Mar 15, 2024

    • connectoflow

      Public
      Nextflow
      •
      MIT License
      •5•3•3•0•Updated Jan 30, 2024Jan 30, 2024