Skip to content

@populationgenomics Centre for Population Genomics

Change the repository type filter

All

    Repositories list

    79 repositories

    • talos

      Public
      Rare Disease variant reanalysis tool
      Python
      •
      MIT License
      •5•8•12•3•Updated Apr 18, 2025Apr 18, 2025

    • production-pipelines

      Public
      Genomics workflows for CPG using Hail Batch
      genome-analysishailseqrbioinformaticspipeline
      Python
      •
      MIT License
      •1•7•47•38•Updated Apr 17, 2025Apr 17, 2025

    • ourdna-browser-blog

      Public
      JavaScript
      •0•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • cpg-flow-gatk-sv

      Public
      CPG-Flow implementation of the GATK-SV pipeline, deployed at the Centre for Population Genomics
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • images

      Public
      Reusable single-software docker images
      Dockerfile
      •
      MIT License
      •2•1•0•10•Updated Apr 17, 2025Apr 17, 2025

    • metamist

      Public
      Sample level metadata system
      Python
      •
      MIT License
      •2•3•43•22•Updated Apr 17, 2025Apr 17, 2025

    • cpg-utils

      Public
      Library of convenience functions specific to the CPG
      Python
      •
      MIT License
      •1•0•2•2•Updated Apr 17, 2025Apr 17, 2025

    • cpg-flow

      Public
      CPG Pipeline Python API
      Python
      •
      MIT License
      •0•0•5•2•Updated Apr 17, 2025Apr 17, 2025

    • cpg-infrastructure

      Public
      This repository is used to manage the infrastructure at the CPG
      Python
      •
      MIT License
      •1•4•6•7•Updated Apr 16, 2025Apr 16, 2025

    • cpg-flow-lrs-annotation

      Public
      For creating annotated callsets for seqr from long-read-sequencing data
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • dragen_align_pa

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • team-docs

      Public
      Documentation, guides, tips and tricks when working at the CPG
      Python
      •
      MIT License
      •1•2•3•9•Updated Apr 14, 2025Apr 14, 2025

    • hail

      Public
      Scalable genomic data analysis.
      Python
      •
      MIT License
      •250•1•3•2•Updated Apr 13, 2025Apr 13, 2025

    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      TypeScript
      •
      MIT License
      •49•0•0•2•Updated Apr 11, 2025Apr 11, 2025

    • ourdna-browser

      Public
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Apr 11, 2025Apr 11, 2025

    • cpg-flow-pipeline-template

      Public template
      A template repository to use as a base for CPG workflows using the cpg-flow pipeline framework
      Python
      •
      MIT License
      •0•0•0•1•Updated Apr 11, 2025Apr 11, 2025

    • test_workflows_shared

      Public template
      Python
      •
      MIT License
      •0•0•1•2•Updated Apr 11, 2025Apr 11, 2025

    • cpg-flow-exomiser

      Public
      CPG-Flow implementation of the CPG Exomiser workflow
      pipelinegenomicsanalysiscpg-flow
      Python
      •
      MIT License
      •0•0•0•1•Updated Apr 10, 2025Apr 10, 2025

    • ourdna_browser_prep_pa

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • references

      Public
      Reference data for bioinformatics workflows
      Python
      •
      MIT License
      •2•1•4•3•Updated Apr 7, 2025Apr 7, 2025

    • gatk-sv

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •75•0•0•1•Updated Apr 7, 2025Apr 7, 2025

    • ClinvArbitration

      Public
      A side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the CPG
      Python
      •
      MIT License
      •0•1•1•1•Updated Apr 3, 2025Apr 3, 2025

    • gnomad-deployments

      Public
      kustomizations for current gnomad project kubernetes deployments
      Makefile
      •1•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • analysis-runner

      Public
      Python
      •
      MIT License
      •4•2•8•4•Updated Mar 26, 2025Mar 26, 2025

    • cpg-flow-gcnv

      Public
      CPG-Flow implementation of the CPG gCNV Exome SV calling workflow
      Python
      •
      MIT License
      •0•0•0•1•Updated Mar 20, 2025Mar 20, 2025

    • seqr

      Public
      web-based analysis tool for rare disease genomics
      Python
      •
      GNU Affero General Public License v3.0
      •90•3•29•3•Updated Mar 18, 2025Mar 18, 2025

    • talos_manuscript

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•1•Updated Mar 18, 2025Mar 18, 2025

    • talos-azure-deploy

      Public
      Shell
      •
      MIT License
      •0•2•0•0•Updated Mar 12, 2025Mar 12, 2025

    • sv-workflows

      Public
      Structural Variation Workflows
      Python
      •
      MIT License
      •1•1•2•10•Updated Feb 17, 2025Feb 17, 2025

    • rare-disease

      Public
      A collection of scripts relating to rare-disease specific projects
      Python
      •
      MIT License
      •1•2•0•1•Updated Jan 31, 2025Jan 31, 2025