Skip to content

Pull requests: populationgenomics/production-pipelines

New pull request New
39 Open 961 Closed
39 Open 961 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Lrs pipeline joint called vcfs
#1188 opened Apr 2, 2025 by EddieLF Loading…
9
[Quick Fix] Multiple Active Analysis Inputs
#1187 opened Apr 1, 2025 by vivbak Loading…
24
Prepare Coverage Hail Table for Browser
#1185 opened Mar 31, 2025 by michael-harper Loading…
1
gnomAD Joint Freq/annotations into MT
#1166 opened Mar 24, 2025 by MattWellie Loading…
1
Update defaults for ICA pipeline
#1156 opened Mar 14, 2025 by Alexander-Stuckey Loading…
1
Prepare browser table genomes
#1154 opened Mar 13, 2025 by michael-harper • Draft
28
Avoid extracting absent SG from callset
#1150 opened Mar 4, 2025 by MattWellie Loading…
1
Re-point images-dev docker images
#1139 opened Feb 18, 2025 by MattWellie Loading…
1
Lrs pipeline updates
#1115 opened Jan 17, 2025 by EddieLF • Draft
1
CPG flow division
#962 opened Oct 29, 2024 by violetbrina • Draft
@violetbrina
1
Ancestry no dp gcta testing
#915 opened Sep 26, 2024 by michael-harper • Draft
1
Add readgroup level stats config option for Picard metrics
#910 opened Sep 19, 2024 by EddieLF Loading…
1
Pip-Audit
#909 opened Sep 18, 2024 by nevoodoo Loading…
3
Testing PCA on GCTA
#908 opened Sep 18, 2024 by michael-harper • Draft
1
Fix cohort.get_sequencing_groups in cpg_workflows targets.py
#899 opened Sep 11, 2024 by EddieLF • Draft
2
Sandwich stage for BioHEART only
#898 opened Sep 10, 2024 by hopedisastro Loading…
@EddieLF
1
Remove Dataproc from AncestryPlots Stage
#897 opened Sep 9, 2024 by michael-harper • Draft
1
Replacing bazam + removing non-dragmap aligners
#871 opened Aug 4, 2024 by michael-harper Loading…
2
Removing options for biobambam as tool for marking duplicates core Changes to the cpg-workflows api enhancement New feature or request
#844 opened Jul 23, 2024 by michael-harper Loading…
2
Simplify Alignment Job and Resolve SAM Flag Issue in CRAM to FASTQ Conversion
#802 opened Jun 25, 2024 by michael-harper • Draft
Extract 'Alignment' and 'Genotype' to be separate independent pipelines
#783 opened Jun 5, 2024 by michael-harper Loading…
7
Refactoring main for local dev
#771 opened May 28, 2024 by milo-hyben • Draft
2
Enable pre-commit mypy checks to typecheck cpg_utils usage
#728 opened May 6, 2024 by jmarshall Loading…
2
Environment Lock
#693 opened Apr 17, 2024 by nevoodoo Loading…
1 task done
4
Sites table generation
#692 opened Apr 16, 2024 by michael-harper • Draft
1
ProTip! Mix and match filters to narrow down what you’re looking for.