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    7 repositories

    • gsMap

      Public
      Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
      gwasspatial-transcriptomics
      Python
      •
      MIT License
      •5•41•0•0•Updated Feb 24, 2025Feb 24, 2025

    • MeDuSA

      Public
      MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.
      single-cell
      R
      •3•41•0•0•Updated Feb 20, 2025Feb 20, 2025

    • MeDuSAJ

      Public
      C++
      •0•3•0•0•Updated Jan 14, 2025Jan 14, 2025

    • depthmate

      Public
      calculate reference and alternate base depth in tumor-normal pair matched bam
      Rust
      •0•2•0•0•Updated Dec 30, 2024Dec 30, 2024

    • .github

      Public
      JianYang Lab
      0•2•0•0•Updated Dec 21, 2024Dec 21, 2024

    • crussmap

      Public
      crussmap is a faster tool to convert genome coordinates between difference reference assemblies.
      rustbioinformatics
      Rust
      •
      MIT License
      •0•13•0•0•Updated May 4, 2023May 4, 2023

    • rsam

      Public
      Random sampler for text-based data in Rust using reservoir sampling algorithm.
      sampledata-science
      Rust
      •
      GNU General Public License v3.0
      •0•8•1•0•Updated Apr 12, 2023Apr 12, 2023