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medinari/README.md

👋 Welcome to Ricardo A.O. Medina's GitHub Profile

🧬 About

Professional Background:

Ricardo AO Medina is a veterinarian interested in clinical microbiology and computer science advances. He holds a PhD in microbiology and parasitology, with experience in animal models and vaccine development. He is currently pursuing a master's in bioinformatics to study the immune system in genetically engineered mice, accelerate drug development, and promote alternatives to animal testing.

Research Experience:

During his time in Spain, he contributed to research projects focusing on:

  • Development of diagnostic methods.
  • Creation of protein- and peptide-based vaccines.
  • Study of vaccine adjuvants.
  • Conducting efficacy trials in animal models, including sheep and inbred mice.

Current Research:

Based in Austria, Ricardo contributes to projects aimed at understanding the mechanisms of T-cell exhaustion, a critical aspect of:

  • Chronic viral infections.
  • Cancer immunology and advancing immunotherapy.

Informatics Enthusiast:

Passionate about the transformative impact of high-throughput sequencing and bioinformatics in microbiology.

  • Particularly interested in artificial intelligence (AI) and machine learning to:
    • Process large datasets.
    • Improve diagnostic precision.
    • Predict disease outbreaks.
    • Identify vaccine antigens.

Ongoing Education:

Currently pursuing a master's degree in bioinformatics to:

  • Use computational tools for modeling infection dynamics and immune responses.
  • Develop more effective treatments and vaccines.
  • Promote alternatives to animal testing and advance in vitro models.

📜 Publications

A list of peer-reviewed publications in diagnosis, vaccine development, animal models and informatics.

Authored Publications in Microbiology and Parasitology

  1. In-plate recapturing of a dual-tagged recombinant Fasciola antigen - PLOS ONE
  2. Antibody responses to chimeric peptides derived from parasite antigens - Molecular Immunology
  3. Vaccination of sheep with Quil-A® adjuvant expands antibody repertoire - Vaccine

Contributions as a Co-author in Diagnostic and Vaccine Development

  1. Comparison of recombinant cathepsins L1, L2, and L5 as ELISA targets for serodiagnosis of bovine and ovine fascioliasis - Parasitology Research
  2. Usefulness of ELISA methods for assessing LPS interactions with proteins and peptides - PLOS ONE
  3. Rapid enhanced MM3-COPRO ELISA for detection of Fasciola coproantigens - PLoS Neglected Tropical Diseases
  4. Exploring the pan-surfome of Streptococcus suis: Looking for common protein antigens - Journal of Proteomics

Collaborations as a Co-author in Computational Modelling and Virology

  1. Mapping chemical structure–activity information of HAART-drug cocktails over complex networks of AIDS epidemiology and socioeconomic data of U.S. counties - Biosystems
  2. Multiscale mapping of AIDS in U.S. counties versus anti-HIV drugs activity with complex networks and information indices - Current Bioinformatics
  3. Mapping networks of anti-HIV drug cocktails versus AIDS epidemiology in U.S. counties - Chemometrics and Intelligent Laboratory Systems
  4. ANN multiscale model of anti-HIV drug activity versus AIDS prevalence in the U.S. at county level based on information indices of molecular graphs and social networks - Journal of Chemical Information and Modelling

🛠 Skills

  • Programming: Python, R statistics, GNU/Linux Shell
  • Immunology Techniques: ELISA, PBMC isolation, antibody purification
  • Bioinformatics Tools: Biopython, RDkit, PyMOL, MASCOT
  • Statistical Analysis: Multivariate data analysis, ROC curves

📫 Contact Me

Popular repositories Loading

  1. medinari medinari Public

    Config files for my GitHub profile.

  2. dot-emacs dot-emacs Public

    configuration files (dot files) related to emacs

    Shell

  3. bashrc bashrc Public

    Configuration of bash prompt PS1-PS4

  4. dotfiles dotfiles Public

    Shell

  5. github_best_practices github_best_practices Public

    This guide outlines best practices for creating, cloning, and managing GitHub repositories to enhance collaboration and project organization.

  6. emacs-jupyter-support emacs-jupyter-support Public

    This repository provides Emacs Lisp code to enhance Jupyter Notebook support in Emacs, automatically installing any missing dependencies.