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Issue on page /chapter4/solvers.html #143

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gerlja opened this issue Sep 26, 2023 · 1 comment
Closed

Issue on page /chapter4/solvers.html #143

gerlja opened this issue Sep 26, 2023 · 1 comment

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@gerlja
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gerlja commented Sep 26, 2023

Dear Mr Dokken,

I noticed that the link to the PETSc documentation doesn't work. It's in the paragraph right below the headline "Choosing a linear solver and preconditioner".

Best regards,
Jonathan
@jorgensd
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Should be:
https://petsc.org/release/manual/ksp/#tab-kspdefaults
and
https://petsc.org/release/manual/ksp/#tab-pcdefaults
with the new webpage layout of petsc

jorgensd added a commit that referenced this issue Dec 6, 2023
@jorgensd
Update petsc solver and pc links. Resolves #143
d78603d
jorgensd added a commit that referenced this issue Dec 7, 2023
@jorgensd
Updates compatible with nightly branch of DOLFINx (#156)
69bf939 
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame
jorgensd added a commit that referenced this issue May 5, 2024
@jorgensd @juliusgh
v0.8.0 (#166)
00055fd 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
jorgensd added a commit that referenced this issue Dec 16, 2024
@jorgensd @juliusgh
@rossbm1 @MPenaR
Dokken/gmshio meshdata (#231)
cdaf6be 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Update based on FEniCS/dolfinx#3547

* Fix merge conflict

* Fix other merge conflict

* Minor fix

* Minor updates

* Remove header and ruff format

* Update note

* Apply suggestions from code review

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
jorgensd added a commit that referenced this issue Feb 4, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update navierstokes.md (#247)
65df368 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update navierstokes.md

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 4, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update elasticity_scaling.md (#242)
92cdebc 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update elasticity_scaling.md

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 4, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update elasticity_scaling.md (#242)
42a47da 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update elasticity_scaling.md

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 4, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update navierstokes.md (#247)
ce12165 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update navierstokes.md

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 4, 2025
@jorgensd @mleoni-pf
@juliusgh @rossbm1 @MPenaR @dependabot @bayswiss
Dokken/bump release (#249)
ce168fa 
* Update elasticity_scaling.md (#242)

* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update elasticity_scaling.md

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update navierstokes.md (#247)

* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update navierstokes.md

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Adding Acoustic Helmholtz equation to the tutorial  (#232)

* Acoustic Helmholtz scripts

helmholtz.md contains the mathematical derivation of the variational formulation, while the helmholtz_code scripts contain the implementation.

* Fix

* equations rendering bug fixed

* Update helmholtz.md

Equations rendering second fix, missing spaces

* Major updates to helmholtz

* Add to toc

* Updates to helmholtz

* Update to work in parallel

---------

Co-authored-by: jorgensd <dokken92@gmail.com>

* Make helmholtz backwards compatible (#248)

* Native arm build (#240)

* Try new publish workflow

* Fix platform choice

* Update workflow to merge artifacts to one place

* Set retention days to minimum

* Fix name

* change name to pattern

* Minor improvements

* Try new strategy

* Remove duplicate tag

* Revert platform tags

* Use correct dockerfile

* remove first login

* Add merge skip if not pushing on release or tagging

* Set push to false as we don't need the images before merging.

* Remove push

* Remove conditional to check that simpler code runs

* Add back pushtrue

* Revert comment

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: mleoni-pf <160495781+mleoni-pf@users.noreply.github.com>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Antonio Baiano Svizzero <107617271+bayswiss@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update linearelasticity_code.ipynb (#246)
494e1d8 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update linearelasticity_code.ipynb

* Add sync with `python3 -m jupytext --sync  */*.ipynb`

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update linearelasticity_code.ipynb (#245)
57de502 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update linearelasticity_code.ipynb

* Add sync with

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update linearelasticity_code.ipynb (#244)
7cde11b 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update linearelasticity_code.ipynb

* Sync file

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update linearelasticity_code.ipynb (#243)
a422205 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update linearelasticity_code.ipynb

* sync

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update ns_code2.ipynb (#241)
84114e8 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update ns_code2.ipynb

* Update ns code

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update linearelasticity_code.ipynb (#246)
096fc96 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update linearelasticity_code.ipynb

* Add sync with `python3 -m jupytext --sync  */*.ipynb`

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update linearelasticity_code.ipynb (#245)
f084a1f 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update linearelasticity_code.ipynb

* Add sync with

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update linearelasticity_code.ipynb (#244)
3bd537c 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update linearelasticity_code.ipynb

* Sync file

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update linearelasticity_code.ipynb (#243)
4e9bac0 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update linearelasticity_code.ipynb

* sync

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jorgensd added a commit that referenced this issue Feb 5, 2025
@mleoni-pf @jorgensd
@juliusgh @rossbm1 @MPenaR @dependabot
Update ns_code2.ipynb (#241)
389d43a 
* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Fix CI (#227)

* Bump docker/build-push-action from 5 to 6 (#221)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump actions/configure-pages from 4 to 5 (#222)

Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update book_stable.yml (#225)

* Update book_stable.yml

* Update test_stable.yml

* resolve #224 (#226)

* Update test_stable.yml

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update test_stable.yml (#235)

* Add libgl flag to ci (#238)

* Update ns_code2.ipynb

* Update ns code

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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