Dokken/gmshio meshdata (#231)

* Improve workflow handling (#118)

* Create common action for all workflows and split them into multiple files

* Dokken/update fspace and wmtgs (#127)

* fix runs-on

* Minor improvements in linearelasticity.md (#124)

* Fix various things on release branch

* Try adding trame

* Revert fundamentals

* Membrane code

* More updates due to autoformatting

* Lagrange -> CG back conversion

* Change to github image

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>

* Update petsc arches

* Fix bounding boxes and more (#135)

* Start fixing code for nightly build

* rerun all files

* Try fixing subdomains

* Fix meshio

* PETSc python API update (#137)

* Resolve #136

* Fixes related to: FEniCS/dolfinx#2703

* Update changelog

* Make sure all notebooks run. Change to pathlib in some examples

* Api changes related to: FEniCS/dolfinx#2763 (#142)

* Bump version numbers

* Bump version numbers (#149)

* Fix petsc arch

* Prepare v0.7.1 (#154)

* Merge branch 'main' into release and bump versions

* Delete obsolete file

* Temporary shift path in nightly test

* Make sure there are no warnigns in build

* Tabulation

* Updates compatible with nightly branch of DOLFINx (#156)

* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`

* More updates

* And more

* Last vector element updates

* Bump pyvista and dolfinx to v0.7.2 (#159)

* Bump pyvista and dolfinx to v0.7.2

* remove -r

* Add further pyvista deps

* Bump versions

* Update petsc solver and pc links. Resolves #143 (#160)

* Fix typo and issue Issue on page /fem.html #122 (#161)

* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion

* Update backend in workflow

* Fix broken link (#140) + http:// to https:// (#162)

* Run book build prior to parallel run

* Add back write frame

* Fix wrong link

* Fix typo in changelog

* Merge main into release (#189)

* Merge main into release

* Apply suggestions from code review

* Various fixes when reading through the diff

* Further fixes

* add missing checkout (#191)

* add missing checkout

* Add test docker on release PR and release (only push on tag

* Remove unused import

* Update text to resolve #194 (#195)

* Dokken/update nonlin options (#203)

* Update options for non-linear solver to sensible choice, ref #200

* Update docker path

* Update python file as well

* Update config ptr (#207)

* Pressure correction equation fix (#196)

* Update fundamentals.md (#199)

on line 110, updated a typesetting error in equation (3)

* Change from vector to petsc_vec (#206)

* dolfinx.fem.Form changed to dolfinx.fem.form (#213)

* Update compiler_parameters.ipynb

In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.

* jupytext sync

* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem

* Update book_stable.yml

* Update test_stable.yml

* Fix python path in test

* Update based on FEniCS/dolfinx#3547

* Fix merge conflict

* Fix other merge conflict

* Minor fix

* Minor updates

* Remove header and ruff format

* Update note

* Apply suggestions from code review

---------

Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>

Author: 4 people

.github/workflows/test_nightly.yml

@@ -67,7 +67,6 @@ jobs:
           mpirun -n 2 python3 nonlinpoisson_code.py
           mpirun -n 2 python3 ns_code1.py
           mpirun -n 2 python3 ns_code2.py
-
       - name: Test chapter 3
         working-directory: chapter3
         run: |
@@ -77,7 +76,6 @@ jobs:
           mpirun -n 2 python3 robin_neumann_dirichlet.py
           mpirun -n 2 python3 component_bc.py
           mpirun -n 2 python3 em.py
-
       - name: Test chapter 4
         working-directory: chapter4
         run: |

Changelog.md

@@ -1,5 +1,15 @@
 # Changelog
 
+## v0.10.0
+
+- Change how one reads in GMSH data with `gmshio`. See [the membrane code](./chapter1/membrane_code.ipynb) for more details.
+- `dolfinx.fem.FiniteElement.interpolation_points()` -> `dolfinx.fem.FiniteElement.interpolation_points`.
+
+## v0.9.0
+
+- `scale` in `apply_lifting` has been renamed to `alpha`
+- Use `dolfinx.fem.Function.x.petsc_vec` as opposed to `dolfinx.fem.Function.vector`
+
 ## v0.8.0
 
 - Replace all `ufl.FiniteElement` and `ufl.VectorElement` with the appropriate `basix.ufl.element`

chapter1/complex_mode.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.16.4
+#       jupytext_version: 1.16.5
 #   kernelspec:
 #     display_name: Python 3 (DOLFINx complex)
 #     language: python

chapter1/fundamentals_code.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.16.4
+#       jupytext_version: 1.16.5
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python