Code

Newest vertex bisection in 2D [WIP]#733

Code

Merged

santiagobadia merged 98 commits intogridap:mastergridap/Gridap.jl:masterfrom aerappa:new-vert-bisaerappa/Gridap.jl:new-vert-bisCopy head branch name to clipboardMay 31, 2022

Commits

Commits on Nov 21, 2021

• Initial commit with empty body newest_vertex_bisection

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• Able to append to the cell_coords array

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• Computing midpoint

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Commits on Nov 27, 2021

• Returning a new UnstructuredGrid

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• Create edge data structure

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• Add test_construct against GridTopolgy

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• Add build_dual_edge

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Commits on Nov 28, 2021

• Add dual_edge and d2p

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• Add sorting ccw of cell_node_ids

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• Returning correct matrix for sort_cells_node_ids_ccw

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• Add back in assertion in test_against_top with sorting

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• Add refine function but getting BoundsError

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• Add setup_markers but needs to be refactored

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Commits on Nov 29, 2021

• Add debugging info

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Commits on Dec 4, 2021

• Refinement appears to be reasonable

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• Getting correct edge length in sort_elem_for_labeling

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• shifting to first seems ok using circshift

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• Refinement working for two elements but not 4

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• Appears to be working for 2x2 mesh

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• Test number of nodes and elems correct for various partitions

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• Cleanup and remove @shows

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• Writing to UnstructuredGrid working

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• Refinement saving as Triangulation with hardcode cell_types

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Commits on Dec 5, 2021

• No hanging nodes after fixing bug on line 53 in RefinedDiscreteModels.jl

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• Longest edge working with loop but not newest vertex

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• Test out random estimator

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• Merge branch 'master' into new-vert-bis

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Commits on Dec 12, 2021

• Merge branch 'master' into new-vert-bis

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• Add top level params eta_arr, theta, sort_flag

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• Verify that meshes are hierarchical when sorting each iteration

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• Remove explicit argument typing for Matrix

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• Clean up comments and replace concrete types with eltype

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• Add Estimator type for testing

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• Overload pow (:^) for VectorValues

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• Switch to 2 space indentation

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Commits on Dec 15, 2021

• Add type arguments for consistency

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• Add comments to setup_markers_and_nodes

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• Add refine_test function

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• Add tests ofr sizes of uniformly refined

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Commits on Dec 16, 2021

• Add closed form tests for number of coords

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• Refactor pure functions and types into src

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• Add deepcopy in nvb not sure if best solution

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• Last commit before PR

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• nonuniform test saving correctly

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• Merge branch 'new-vert-bis' of github.com:aerappa/Gridap.jl into new-vert-bis

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Commits on Dec 24, 2021

• Change from Vector to AbstractArray to allow for more general containers

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Commits on Dec 29, 2021

• Add comment to give credit to Long Chen

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Commits on Jan 14, 2022

• Set nonuniform_write_to_vtk to false

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Commits on Jan 27, 2022

• Remove conversion to Matrix

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Commits on Jan 30, 2022

• Convert to Vector{Vector} for bisect

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• Move all testing code to test/

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• Rename to NewestVertexBisection

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• Rename in test/runtest.jl

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• Prepend all private functions with underscore

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• Change from Ti to T

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• Merge branch 'master' into new-vert-bis

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• Add TimerOutputs to project. Can delete after testing

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Commits on Feb 3, 2022

• Merge branch 'gridap:master' into new-vert-bis

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Commits on Feb 11, 2022

• Make type of eta_arr more generic

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• Change type of node_coords

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• Kludge for non-lazy (resizable) version of node_coords

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• Apply same kludge to cell_types

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• Change to ge for condition with theta parameter

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• Temporary commit to test sorting issue for RT

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Commits on Feb 14, 2022

• Add docstring for main function

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• Remove deepcopy for model

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Commits on Feb 17, 2022

• Address Francesc 2nd round of review

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• Change should_sort documentation to be consistent

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Commits on Feb 21, 2022

• Remove Table based indexing for sorting functions

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• Change to buffer based interface

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• Add extra _unsort variables to keep track of cell_node_ids

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• Fix typo in non-buffer version

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Commits on Mar 20, 2022

• Add binary tree for relating cells on two levels

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Commits on Mar 21, 2022

• Debugging deliniate_new_edges

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• Parent child relationship for edges looks correct

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• Add create_d_to_dface_to_old general

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• Add set_to_dface_to_old_node!

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• Add set_d_to_dface_to_old_cell

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• Clean up a bit and add commments

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Commits on Mar 23, 2022

• Add propogate_labeling

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• Debug propogate_labeling

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• Debug edge case of markers[left] > 0 and markers[right] > 0

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• Update Francesc suggestons for propogate_labeling

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• Merge branch 'master' into new-vert-bis

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• Fix path in runtests

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Commits on Mar 25, 2022

• Fix edge mismatch with node_to_bis_edge

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• Change to Grid inside buffer and remove redundant public function

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• Merge branch 'gridap:master' into new-vert-bis

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• Remove last show

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• Merge branch 'new-vert-bis' of github.com:aerappa/Gridap.jl into new-vert-bis

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Commits on Mar 28, 2022

• Add combinatorial test for boundary nodes

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• Finish tests for labels

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Commits on Mar 29, 2022

• Refactor and comment

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• Refactor and comment

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• Merge branch 'new-vert-bis' of github.com:aerappa/Gridap.jl into new-vert-bis

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Commits on Mar 31, 2022

• Add back check for intersect in dface_to_old_edge

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• Rollback to autolabeling for testing estimator

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• Add back label propogation algorithm

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