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Create PULL_REQUEST_TEMPLATE.md #260

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Jul 17, 2018
Merged

Create PULL_REQUEST_TEMPLATE.md #260

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26 changes: 26 additions & 0 deletions .github/PULL_REQUEST_TEMPLATE.md
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# What?
Fix # .

Cancer studies updated in this pull request:
- a
- .

# checks
For all pull requests:
- [ ] Passes validation

For a new study (in addition to above):
- [ ] Does study name and study ID follow our convention? e.g. Tumor_Type (Institue, Journal Year); brca_mskcc_2015
- [ ] is study meta data complete? e.g. pmid, group of PUBLIC
- [ ] were all samples profiled with WES/WGS? If not, is gene panel file curated?
- [ ] are oncotree codes of all samples curated; Cancer Type and Cancer Type Detailed needs to be added in addition to Oncotree Code
- [ ] clinical sample and patient data with meta files
- [ ] mutations data with meta files
- [ ] MAF is based on hg19
- [ ] MAF with 2 isoforms: uniprot and mskcc
- [ ] CNA data with meta files
- [ ] CNA segment data with meta files
- [ ] Expression data including z-scores with meta files
- [ ] Case-lists for all profiles.
- [ ] Manual checking (Niki or JJ): Triage or private Portal link here