Fix # .
Cancer studies updated in this pull request:
- a
- .
For all pull requests:
- Passes validation
For a new study (in addition to above):
- Does study name and study ID follow our convention? e.g. Tumor_Type (Institue, Journal Year); brca_mskcc_2015
- is study meta data complete? e.g. pmid, group of PUBLIC
- were all samples profiled with WES/WGS? If not, is gene panel file curated?
- are oncotree codes of all samples curated; Cancer Type and Cancer Type Detailed needs to be added in addition to Oncotree Code
- clinical sample and patient data with meta files
- mutations data with meta files
- MAF is based on hg19
- MAF with 2 isoforms: uniprot and mskcc
- CNA data with meta files
- CNA segment data with meta files
- Expression data including z-scores with meta files
- Case-lists for all profiles.
- Manual checking (Niki or JJ): Triage or private Portal link here