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feature/add bioimage #8

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merged 5 commits into from
Jul 13, 2023
Merged

feature/add bioimage #8

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ddb8a14
Enable downloading test resources
SeanLeRoy Jul 3, 2023
7fac5ab
Add BioImage
SeanLeRoy Jul 3, 2023
dce4ed6
Add tests for BioImage
SeanLeRoy Jul 3, 2023
dd495f4
bioio-types -> bioio-base
SeanLeRoy Jul 3, 2023
75d2561
Add staticmethod declaration
SeanLeRoy Jul 6, 2023
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3 changes: 3 additions & 0 deletions .gitignore
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Expand Up @@ -50,6 +50,9 @@ coverage.xml
.hypothesis/
.pytest_cache/

# Unit test files
bioio/tests/resources/

# Translations
*.mo
*.pot
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2 changes: 1 addition & 1 deletion CONTRIBUTING.md
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Expand Up @@ -25,7 +25,7 @@ Ready to contribute? Here's how to set up `bioio` for local development.

```bash
cd bioio/
just install
just setup-dev
```

4. Create a branch for local development:
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6 changes: 6 additions & 0 deletions Justfile
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Expand Up @@ -37,6 +37,12 @@ build:
just lint
just test

# install dependencies, setup pre-commit, download test resources
setup-dev:
just install
pre-commit install
python scripts/download_test_resources.py

# generate Sphinx HTML documentation
generate-docs:
rm -f docs/bioio*.rst
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6 changes: 6 additions & 0 deletions bioio/__init__.py
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Expand Up @@ -4,10 +4,16 @@

from importlib.metadata import PackageNotFoundError, version

from .bio_image import BioImage

try:
__version__ = version("bioio")
except PackageNotFoundError:
__version__ = "uninstalled"

__author__ = "Eva Maxfield Brown, Dan Toloudis, BioIO Contributors"
__email__ = "evamaxfieldbrown@gmail.com, danielt@alleninstitute.org"

__all__ = [
"BioImage",
]
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