Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update README.md #9

Merged
merged 1 commit into from
Dec 3, 2024
Merged

Update README.md #9

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 7 additions & 0 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,13 @@ conda install --yes -c conda-forge -c bioconda quicktree snakemake intervaltree
R -e 'install.packages(c("gggenomes"), repos = "https://cran.r-project.org")'
```

### Setting up environment to run ntSynt-viz
Once all dependencies are installed, simply clone the source code, and add the `bin` directory to your PATH
```
git clone https://github.com/bcgsc/ntSynt-viz.git
export PATH=/path/to/ntsynt-viz/github/ntSynt-viz/bin:$PATH
```

## Usage
```
usage: ntsynt_viz.py [-h] --blocks BLOCKS --fais FAIS [FAIS ...] [--name_conversion NAME_CONVERSION] [--tree TREE] [--target-genome TARGET_GENOME] [--normalize]
Expand Down