Merge pull request NOAA-EMC#253 from NOAA-EMC/issue240

NCO updates for GFSv16.0.4[5][6]

Externals.cfg

@@ -1,7 +1,7 @@
 # External sub-modules of global-workflow
 
 [FV3GFS]
-tag = GFS.v16.0.14
+tag = GFS.v16.0.15
 local_path = sorc/fv3gfs.fd
 repo_url = https://github.com/ufs-community/ufs-weather-model.git
 protocol = git
@@ -15,14 +15,14 @@ protocol = git
 required = True
 
 [GLDAS]
-tag = gldas_gfsv16_release.v1.12.0
+tag = gldas_gfsv16_release.v1.13.0
 local_path = sorc/gldas.fd
 repo_url = https://github.com/NOAA-EMC/GLDAS.git
 protocol = git
 required = True
 
 [EMC_post]
-tag = upp_gfsv16_release.v1.1.1
+tag = upp_gfsv16_release.v1.1.3
 local_path = sorc/gfs_post.fd
 repo_url = https://github.com/NOAA-EMC/EMC_post.git
 protocol = git
@@ -43,7 +43,7 @@ protocol = git
 required = True
 
 [EMC_gfs_wafs]
-tag = gfs_wafs.v6.0.17
+tag = gfs_wafs.v6.0.18
 local_path = sorc/gfs_wafs.fd
 repo_url = https://github.com/NOAA-EMC/EMC_gfs_wafs.git
 protocol = git

ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf

@@ -3,7 +3,6 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_analysis_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-##BSUB -W 0:45   # 11/02/2020 temporarily change
 #BSUB -W 1:00
 #BSUB -n 1000
 #BSUB -R affinity[core(7)]

ecflow/ecf/scripts/gdas/atmos/gempak/jgdas_atmos_gempak.ecf

@@ -3,9 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_gempak_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-## JY temporarily increase wall clock as the submit time is long 
-##BSUB -W 0:15
-#BSUB -W 0:30
+#BSUB -W 0:15
 #BSUB -n 2
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=1]

ecflow/ecf/scripts/gdas/atmos/init/jgdas_atmos_gldas.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_gldas_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 2:00
+#BSUB -W 0:20
 #BSUB -n 112
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=28]

ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_emcsfc_sfc_prep.ecf

@@ -3,7 +3,7 @@
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
 #BSUB -L /bin/sh
-#BSUB -W 0:10
+#BSUB -W 0:08
 #BSUB -n 1
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=1]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_anl.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f000.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f001.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f002.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f003.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f004.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f005.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f006.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f007.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f008.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_f009.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_post_%FHR%_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:20
+#BSUB -W 0:12
 #BSUB -n 98
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=14]

ecflow/ecf/scripts/gdas/atmos/verf/jgdas_atmos_verfozn.ecf

@@ -3,7 +3,7 @@
 #BSUB -o %COM%/output/%ENVIR%/today/gdas_atmos_verfozn_%CYC%.o%J
 #BSUB -q %QUEUE%
 #BSUB -P %PROJ%
-#BSUB -W 0:10
+#BSUB -W 0:05
 #BSUB -n 1
 #BSUB -R affinity[core(1)]
 #BSUB -R span[ptile=1]

ecflow/ecf/scripts/gdas/enkf/post/jgdas_enkf_post_f003.ecf

@@ -0,0 +1,62 @@
+#BSUB -L /bin/sh
+#BSUB -J %E%gdas_enkf_post_f%FHOUT_EPOS%_%CYC%
+#BSUB -o %COM%/output/%ENVIR%/today/gdas_enkf_post_f%FHOUT_EPOS%_%CYC%.o%J
+#BSUB -q %QUEUE%
+#BSUB -P %PROJ%
+#BSUB -W 0:15
+#BSUB -n 80
+#BSUB -R affinity[core(7)]
+#BSUB -R span[ptile=4]
+#BSUB -cwd /tmp
+
+%include <head.h>
+%include <envir-p3.h>
+
+set -x
+
+export NODES=20
+export ntasks=80
+export ptile=4
+
+export NET=%NET:gfs%
+export RUN=%RUN%
+export CDUMP=%RUN%
+
+model=gfs
+%include <model_ver.h>
+
+############################################################
+# Load modules
+############################################################
+module load lsf/$lsf_ver
+module load impi/$impi_ver
+module load NetCDF-parallel/${netcdf_parallel_ver}
+module load HDF5-parallel/${hdf5_parallel_ver}
+
+module list
+
+#############################################################
+# WCOSS environment settings
+#############################################################
+export FHMIN_EPOS=%FHOUT_EPOS%
+export FHMAX_EPOS=%FHOUT_EPOS%
+export FHOUT_EPOS=%FHOUT_EPOS%
+export cyc=%CYC%
+export cycle=t%CYC%z
+export USE_CFP=YES
+
+############################################################
+# CALL executable job script here
+############################################################
+$HOMEgfs/jobs/JGDAS_ENKF_POST
+
+if [ $? -ne 0 ]; then
+   ecflow_client --msg="***JOB ${ECF_NAME} ERROR RUNNING J-SCRIPT ***"
+   ecflow_client --abort
+   exit
+fi
+
+%include <tail.h>
+%manual
+
+%end

ecflow/ecf/scripts/gdas/enkf/post/jgdas_enkf_post_f004.ecf

@@ -0,0 +1,62 @@
+#BSUB -L /bin/sh
+#BSUB -J %E%gdas_enkf_post_f%FHOUT_EPOS%_%CYC%
+#BSUB -o %COM%/output/%ENVIR%/today/gdas_enkf_post_f%FHOUT_EPOS%_%CYC%.o%J
+#BSUB -q %QUEUE%
+#BSUB -P %PROJ%
+#BSUB -W 0:15
+#BSUB -n 80
+#BSUB -R affinity[core(7)]
+#BSUB -R span[ptile=4]
+#BSUB -cwd /tmp
+
+%include <head.h>
+%include <envir-p3.h>
+
+set -x
+
+export NODES=20
+export ntasks=80
+export ptile=4
+
+export NET=%NET:gfs%
+export RUN=%RUN%
+export CDUMP=%RUN%
+
+model=gfs
+%include <model_ver.h>
+
+############################################################
+# Load modules
+############################################################
+module load lsf/$lsf_ver
+module load impi/$impi_ver
+module load NetCDF-parallel/${netcdf_parallel_ver}
+module load HDF5-parallel/${hdf5_parallel_ver}
+
+module list
+
+#############################################################
+# WCOSS environment settings
+#############################################################
+export FHMIN_EPOS=%FHOUT_EPOS%
+export FHMAX_EPOS=%FHOUT_EPOS%
+export FHOUT_EPOS=%FHOUT_EPOS%
+export cyc=%CYC%
+export cycle=t%CYC%z
+export USE_CFP=YES
+
+############################################################
+# CALL executable job script here
+############################################################
+$HOMEgfs/jobs/JGDAS_ENKF_POST
+
+if [ $? -ne 0 ]; then
+   ecflow_client --msg="***JOB ${ECF_NAME} ERROR RUNNING J-SCRIPT ***"
+   ecflow_client --abort
+   exit
+fi
+
+%include <tail.h>
+%manual
+
+%end

ecflow/ecf/scripts/gdas/enkf/post/jgdas_enkf_post_f005.ecf

@@ -0,0 +1,62 @@
+#BSUB -L /bin/sh
+#BSUB -J %E%gdas_enkf_post_f%FHOUT_EPOS%_%CYC%
+#BSUB -o %COM%/output/%ENVIR%/today/gdas_enkf_post_f%FHOUT_EPOS%_%CYC%.o%J
+#BSUB -q %QUEUE%
+#BSUB -P %PROJ%
+#BSUB -W 0:15
+#BSUB -n 80
+#BSUB -R affinity[core(7)]
+#BSUB -R span[ptile=4]
+#BSUB -cwd /tmp
+
+%include <head.h>
+%include <envir-p3.h>
+
+set -x
+
+export NODES=20
+export ntasks=80
+export ptile=4
+
+export NET=%NET:gfs%
+export RUN=%RUN%
+export CDUMP=%RUN%
+
+model=gfs
+%include <model_ver.h>
+
+############################################################
+# Load modules
+############################################################
+module load lsf/$lsf_ver
+module load impi/$impi_ver
+module load NetCDF-parallel/${netcdf_parallel_ver}
+module load HDF5-parallel/${hdf5_parallel_ver}
+
+module list
+
+#############################################################
+# WCOSS environment settings
+#############################################################
+export FHMIN_EPOS=%FHOUT_EPOS%
+export FHMAX_EPOS=%FHOUT_EPOS%
+export FHOUT_EPOS=%FHOUT_EPOS%
+export cyc=%CYC%
+export cycle=t%CYC%z
+export USE_CFP=YES
+
+############################################################
+# CALL executable job script here
+############################################################
+$HOMEgfs/jobs/JGDAS_ENKF_POST
+
+if [ $? -ne 0 ]; then
+   ecflow_client --msg="***JOB ${ECF_NAME} ERROR RUNNING J-SCRIPT ***"
+   ecflow_client --abort
+   exit
+fi
+
+%include <tail.h>
+%manual
+
+%end