Code

Latest staging code#562

Code

Merged

alanbchristie merged 68 commits intoproductionxchem/fragalysis-backend:productionfrom stagingxchem/fragalysis-backend:stagingCopy head branch name to clipboardMar 13, 2024

Commits

Commits on Feb 12, 2024

• Some changes to cset_upload.py to allow site observation short codes (#527)

  Show description for 4a703ed
  kaliif

  authored
  4a703ed

  Copy full SHA for 4a703ed

• stashing

  kaliif

  committed
  433f232

  Copy full SHA for 433f232

Commits on Feb 13, 2024

• stashing

  kaliif

  committed
  3d255f2

  Copy full SHA for 3d255f2

• Short code prefix and tooltip to backend

  Show description for 7fd97c9
  kaliif

  committed
  7fd97c9

  Copy full SHA for 7fd97c9

Commits on Feb 14, 2024

• Prefix tooltip now serverd by api/site_observation

  kaliif

  committed
  f43eabf

  Copy full SHA for f43eabf

• stashing

  kaliif

  committed
  1187569

  Copy full SHA for 1187569

• Site observation groups for shortcodes now by experiment

  kaliif

  committed
  632719a

  Copy full SHA for 632719a

• Merge pull request #528 from xchem/m2ms-1334-short-code-prefix

  Show description for 654f87c
  kaliif

  authored
  654f87c

  Copy full SHA for 654f87c

Commits on Feb 15, 2024

• feat: download structure fixed

  Show description for 30c1080
  kaliif

  committed
  30c1080

  Copy full SHA for 30c1080

• All yaml files added to download

  kaliif

  committed
  1744688

  Copy full SHA for 1744688

• New format to download zip (issue 1326) (#530)

  Show description for 417126f
  kaliif

  authored
  417126f

  Copy full SHA for 417126f

Commits on Feb 16, 2024

• cset_upload.py: lhs_pdb renamed to ref_pdb

  kaliif

  committed
  ef6d56a

  Copy full SHA for ef6d56a

• Merge pull request #531 from xchem/m2ms-1327-ref-mols

  Show description for 363b0e2
  Waztom

  authored
  363b0e2

  Copy full SHA for 363b0e2

• Renamed canon- and conf site tags

  kaliif

  committed
  be12762

  Copy full SHA for be12762

• Merge pull request #532 from xchem/m2ms-1277-canon-conf-tags

  Show description for b5639af
  kaliif

  authored
  b5639af

  Copy full SHA for b5639af

Commits on Feb 19, 2024

• Adds support for key-based SSH connections (#534)

  Show description for f3483bb
  

  alanbchristie

  and

  Alan Christie

  authored
  f3483bb

  Copy full SHA for f3483bb

• build(deps): bump cryptography from 42.0.0 to 42.0.2 (#533)

  Show description for 62c04bd
  dependabot[bot]

  authored
  62c04bd

  Copy full SHA for 62c04bd

• docs: Updates documentation (#536)

  Show description for 4b509eb
  

  alanbchristie

  and

  Alan Christie

  authored
  4b509eb

  Copy full SHA for 4b509eb

• build(deps): bump django from 3.2.20 to 3.2.24 (#535)

  Show description for 51d9b35
  dependabot[bot]

  authored
  51d9b35

  Copy full SHA for 51d9b35

Commits on Feb 20, 2024

• fix: reverting wrong changes

  kaliif

  committed
  05ba0ef

  Copy full SHA for 05ba0ef

• fix: reverting wrong changes (#538)

  kaliif

  authored
  ad39996

  Copy full SHA for ad39996

• Merge branch 'staging' into m2ms-1327-rhs-upload

  kaliif

  committed
  af5cb4d

  Copy full SHA for af5cb4d

Commits on Feb 22, 2024

• stashing

  kaliif

  committed
  7521b7a

  Copy full SHA for 7521b7a

• Merge branch 'staging' into m2ms-1326-download-zip

  kaliif

  committed
  b51e8df

  Copy full SHA for b51e8df

• add site observation's ligand sdf to aligned_files

  kaliif

  committed
  d8d4e06

  Copy full SHA for d8d4e06

• Merge pull request #540 from xchem/m2ms-1326-download-zip

  Show description for 9cf5a88
  kaliif

  authored
  9cf5a88

  Copy full SHA for 9cf5a88

Commits on Feb 23, 2024

• fix: custom pdb now downloadable

  kaliif

  committed
  ad8cc40

  Copy full SHA for ad8cc40

• Merge pull request #541 from xchem/m2ms-1327-rhs-upload

  Show description for 8377860
  kaliif

  authored
  8377860

  Copy full SHA for 8377860

Commits on Feb 27, 2024

• fix: increased loglevel to error on unexpected exceptions block

  kaliif

  committed
  27d6ff5

  Copy full SHA for 27d6ff5

• Merge pull request #542 from xchem/target_loader_loglevel_fix

  Show description for 0984cad
  kaliif

  authored
  0984cad

  Copy full SHA for 0984cad

Commits on Feb 29, 2024

• Merge branch 'production' into staging

  alanbchristie

  authored
  4f3e1f2

  Copy full SHA for 4f3e1f2

• fix: Discourse service check now checks API key before creating a service (#544)

  Show description for c130a12
  

  alanbchristie

  and

  Alan Christie

  authored
  c130a12

  Copy full SHA for c130a12

• build(deps): bump cryptography from 42.0.2 to 42.0.4 (#539)

  Show description for 4e8db0b
  dependabot[bot]

  authored
  4e8db0b

  Copy full SHA for 4e8db0b

• metadata.csv populated

  Show description for 09c3c08
  kaliif

  committed
  09c3c08

  Copy full SHA for 09c3c08

Commits on Mar 1, 2024

• upload_name automatically pouplated when creating tags in UI

  Show description for 0aa1f7d
  kaliif

  committed
  0aa1f7d

  Copy full SHA for 0aa1f7d

• Merge branch 'staging' into m2ms-1343-metadata

  kaliif

  committed
  45329ac

  Copy full SHA for 45329ac

• Merge pull request #546 from xchem/m2ms-1343-metadata

  Show description for 49f13cb
  kaliif

  authored
  49f13cb

  Copy full SHA for 49f13cb

• changes to api/download_structures

  Show description for bc7fcd1
  kaliif

  committed
  bc7fcd1

  Copy full SHA for bc7fcd1

• don't download neighbourhoods.yaml unless trans_matrix_info is checked

  kaliif

  committed
  5f2320a

  Copy full SHA for 5f2320a

• fixed error handling (errors.csv) and not returning combined sdf

  kaliif

  committed
  5f268d7

  Copy full SHA for 5f268d7

• Merge pull request #547 from xchem/m2ms-1326-download-zip-api

  Show description for a860bfc
  kaliif

  authored
  a860bfc

  Copy full SHA for a860bfc

Commits on Mar 4, 2024

• fix: Added parsing directives to DownloadStructuresserializer

  kaliif

  committed
  22f9641

  Copy full SHA for 22f9641

• Merge pull request #548 from xchem/m2ms-1326-download-zip-api

  Show description for c8bbf2c
  kaliif

  authored
  c8bbf2c

  Copy full SHA for c8bbf2c

• Consecutive numbering of observations under canon site

  kaliif

  committed
  bc17249

  Copy full SHA for bc17249

• Merge pull request #549 from xchem/m2ms-1361-site-numbering

  Show description for 65dba3c
  kaliif

  authored
  65dba3c

  Copy full SHA for 65dba3c

Commits on Mar 5, 2024

• SiteObservatdion.tag split to tag and tag_prefix (1361)

  kaliif

  committed
  3d8202a

  Copy full SHA for 3d8202a

• fix: crystallographic_files folders in download now sans suffix (#550)

  kaliif

  authored
  afe10e2

  Copy full SHA for afe10e2

• Merge pull request #551 from xchem/m2ms-1361-site-numbering

  Show description for 26dceac
  kaliif

  authored
  26dceac

  Copy full SHA for 26dceac

• Merge branch 'production' into staging

  alanbchristie

  authored
  a8647bf

  Copy full SHA for a8647bf

• fix: tag names underdand prefix in download's metadata.csv

  kaliif

  committed
  d7cc29a

  Copy full SHA for d7cc29a

• Merge pull request #552 from xchem/m2ms-1343-tags-missing

  Waztom

  authored
  05e3712

  Copy full SHA for 05e3712

Commits on Mar 7, 2024

• fix: return all proteins listed in api/download_structures

  kaliif

  committed
  e037ac0

  Copy full SHA for e037ac0

• Merge pull request #553 from xchem/m2ms-1375-missing-proteins

  Show description for ec72f89
  kaliif

  authored
  ec72f89

  Copy full SHA for ec72f89

• fix: fixed 'All structures' option not working in download dialog

  kaliif

  committed
  d4783bb

  Copy full SHA for d4783bb

• Merge pull request #554 from xchem/m2ms-1375-missing-proteins

  Show description for ac7f37f
  kaliif

  authored
  ac7f37f

  Copy full SHA for ac7f37f

• Migrations for new file fields

  kaliif

  committed
  c08f18b

  Copy full SHA for c08f18b

• Issue 1326 - mol and smiles added to download bundle

  Show description for 8b73749
  kaliif

  committed
  8b73749

  Copy full SHA for 8b73749

Commits on Mar 8, 2024

• Target loader should handle empty code_prefix and tooltip

  Show description for 1f1de43
  kaliif

  committed
  1f1de43

  Copy full SHA for 1f1de43

• Column 'Downloaded' to metadata.csv in downloads

  kaliif

  committed
  35ba439

  Copy full SHA for 35ba439

• fix: restore 'upload_name' in site obvs tags to prefix-tag format

  kaliif

  committed
  46278e3

  Copy full SHA for 46278e3

• Merge pull request #556 from xchem/restore_tag_upload_name

  Show description for 7dad864
  kaliif

  authored
  7dad864

  Copy full SHA for 7dad864

Commits on Mar 11, 2024

• Removed ligand_smiles workaround

  Show description for b952242
  kaliif

  committed
  b952242

  Copy full SHA for b952242

• Merge pull request #557 from xchem/m2ms-1326-more-files-to-zip

  Show description for 6a23b7e
  kaliif

  authored
  6a23b7e

  Copy full SHA for 6a23b7e

• Merge pull request #558 from xchem/m2ms-1368-empty-shortcode

  Show description for 6d7be08
  kaliif

  authored
  6d7be08

  Copy full SHA for 6d7be08

• fix: Add force_error_display to connection functions (default False) (#559)

  Show description for 6d2511e
  

  alanbchristie

  and

  Alan Christie

  authored
  6d2511e

  Copy full SHA for 6d2511e

Commits on Mar 12, 2024

• Merge branch 'production' into staging

  alanbchristie

  authored
  e65dc6b

  Copy full SHA for e65dc6b

• Align production with staging (#555) (#560)

  Show description for 14cd643
  

  5 peopleauthored
  14cd643

  Copy full SHA for 14cd643

Commits on Mar 13, 2024

• Add DISABLE_RESTRICT_PROPOSALS_TO_MEMBERSHIP (#561)

  Show description for 7805e71
  

  alanbchristie

  and

  Alan Christie

  authored
  7805e71

  Copy full SHA for 7805e71