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Detectability Task #46

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merged 2 commits into from
Oct 30, 2024
Merged

Detectability Task #46

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e075305
Feature/detectability integration hf updates (#45)
omsh Oct 30, 2024
5a860e1
version 0.1.4 and README.md updates
omsh Oct 30, 2024
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4 changes: 4 additions & 0 deletions README.md
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Expand Up @@ -47,6 +47,9 @@ $ pip install dlomix[wandb]
- Fragment Ion Intensity Prediction:
- a multi-output regression problem where the intensity values for fragment ions are predicted given a peptide sequence along with some additional features.

- Peptide Detectability:
- a multi-class classification problem where the detectability of a peptide is predicted given the peptide sequence.



**To-Do**
Expand All @@ -59,6 +62,7 @@ Functionality:
- [X] add residual plots to reporting, possibly other regression analysis tools
- [X] output reporting results as PDF
- [X] refactor reporting module to use W&B Report API (Retention Time)
- [X] add additional detectability task
- [ ] extend pipeline for different types of models and backbones
- [ ] extend pipeline to allow for fine-tuning with custom datasets

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