Feature/prosit improvements dataset caching (#34)

* improvements to prosit intensity + dataset caching + others

* removed extra notebook

* cleaned up print statements

* dev install command fix

* added flag for tf dataset cache + notebook minor updates

* remove wandb from report init + notebook updates

* uncommented notebook pip install

.gitignore

@@ -54,8 +54,8 @@ coverage.xml
 .hypothesis/
 .pytest_cache/
 
-# put all coverage in one place
-cov/
+# put all test results and coverage in one place
+.test_results/
 
 # Translations
 *.mo

Makefile

@@ -15,16 +15,16 @@ install-dev:
 test:
 	make uninstall
 	make install
-	mkdir -p cov/
+	mkdir -p .test_results/cov/
 
-	python -m pytest tests/ --junitxml=junit/test-results.xml --cov=dlomix --cov-report html:cov/cov_html --cov-report xml:cov/cov.xml --cov-report lcov:cov/cov.info --cov-report annotate:cov/cov_annotate
+	python -m pytest tests/ --junitxml=.test_results/junit/test-results.xml --cov=dlomix --cov-report html:.test_results/cov/cov_html --cov-report xml:.test_results/cov/cov.xml --cov-report lcov:.test_results/cov/cov.info --cov-report annotate:.test_results/cov/cov_annotate
 
 test-local:
 	make uninstall
 	make install-nodeps
-	mkdir -p cov/
+	mkdir -p .test_results/cov/
 
-	python -m pytest tests/ --junitxml=junit/test-results.xml --cov=dlomix --cov-report html:cov/cov_html --cov-report xml:cov/cov.xml --cov-report lcov:cov/cov.info --cov-report annotate:cov/cov_annotate
+	python -m pytest tests/ --junitxml=.test_results/junit/test-results.xml --cov=dlomix --cov-report html:.test_results/cov/cov_html --cov-report xml:.test_results/cov/cov.xml --cov-report lcov:.test_results/cov/cov.info --cov-report annotate:.test_results/cov/cov_annotate
 
 
 format:

docs/notes/installation.rst

@@ -15,14 +15,14 @@ DLOmix can be installed via pip:
 
   pip install dlomix
 
-To get the dev version, you can install directly from GitHub:
+To get the dev version, you can install directly from GitHub (develop branch):
 
 .. code-block:: bash
 
-  pip install git+https://github.com/wilhelmlab/dlomix.git
+  pip install git+https://github.com/wilhelm-lab/dlomix.git@develop
 
-If you decide to use Weights & Biases for reporting, you can use the extra install command: 
+If you decide to use Weights & Biases for reporting, you can use the extra install command:
+
+.. code-block:: bash
 
-.. code-block:: bash 
-  
   pip install dlomix[wandb]