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  1. deeptools/deepTools Public

    Tools to process and analyze deep sequencing data.

    Python 720 216

  2. deeptools/HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 250 72

  3. maxplanck-ie/snakepipes Public

    Customizable workflows based on snakemake and python for the analysis of NGS data

    Python 397 87

  4. deeptools/pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    Python 816 120

  5. Subread_to_DEXSeq Public

    Scripts to import your FeatureCounts output into DEXSeq

    Python 33 21

  6. bhardwaj-lab/sincei Public

    A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data

    Python 6