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deprecate caching #290

Merged
merged 1 commit into from
Jun 13, 2019
Merged

deprecate caching #290

merged 1 commit into from
Jun 13, 2019

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vpsx
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@vpsx vpsx commented Jun 13, 2019

Breaking Changes

deprecate "related cases" caching--not a problem if CASE_CACHE was False

@vpsx vpsx force-pushed the chore/rm-caching branch from 6e8c443 to 83f6242 Compare June 13, 2019 17:58
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Jenkins Build 2 : time taken 43 min
Check the https://jenkins.planx-pla.net/job/Performance%20tests%20for%20uc-cdis/job/sheepdog/job/PR-290/2/display/redirect

Test results:
Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @performance: Export all nodes of type: aliquot 0.382 0.229 0.15
@ExportPerformanceTests @performance: Export all nodes of type: case 0.195 0.437 -0.24
@ExportPerformanceTests @performance: Export all nodes of type: experiment 0.436 0.314 0.12
@ExportPerformanceTests @performance: Export all nodes of type: program 0.075 0.069 0.01
@ExportPerformanceTests @performance: Export all nodes of type: read_group 0.433 0.558 -0.13
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: aliquot 0.133 0.206 -0.07
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: case 0.234 0.28 -0.05
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: experiment 0.214 0.246 -0.03
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: read_group_qc 0.057 0.166 -0.11
@QueryPerformanceTests @performance: Executing bottomUp query # 0 0.721 0.682 0.04
@QueryPerformanceTests @performance: Executing bottomUp query # 1 0.613 0.804 -0.19
@QueryPerformanceTests @performance: Executing bottomUp query # 3 0.502 0.68 -0.18
@QueryPerformanceTests @performance: Executing bottomUp query # 4 0.395 0.596 -0.20
@QueryPerformanceTests @performance: Executing bottomUp query # 5 0.254 0.37 -0.12
@QueryPerformanceTests @performance: Executing bottomUp query # 6 0.156 0.26 -0.10
@QueryPerformanceTests @performance: Executing bottomUp query # 7 0.091 0.137 -0.05
@QueryPerformanceTests @performance: Executing topDown query # 0 0.059 0.105 -0.05
@QueryPerformanceTests @performance: Executing topDown query # 1 0.085 0.077 0.01
@QueryPerformanceTests @performance: Executing topDown query # 2 0.097 0.115 -0.02
@QueryPerformanceTests @performance: Executing topDown query # 3 0.173 0.219 -0.05
@QueryPerformanceTests @performance: Executing topDown query # 6 0.806 0.701 0.11
@SubmissionPerformanceTests @performance: Submission acknowledgement 10 0.305 0.331 -0.03
@SubmissionPerformanceTests @performance: Submission acknowledgement 1000 21.642 20.361 1.28
@SubmissionPerformanceTests @performance: Submission aligned_reads_index 10 1.983 2.142 -0.16
@SubmissionPerformanceTests @performance: Submission aligned_reads_index 100 19.285 20.765 -1.48
@SubmissionPerformanceTests @performance: Submission aliquot 100 2.124 2.778 -0.65
@SubmissionPerformanceTests @performance: Submission aliquot 1000 21.058 25.424 -4.37
@SubmissionPerformanceTests @performance: Submission case 10 0.326 0.454 -0.13
@SubmissionPerformanceTests @performance: Submission case 100 2.302 1.937 0.37
@SubmissionPerformanceTests @performance: Submission clinical_test 10 0.332 0.356 -0.02
@SubmissionPerformanceTests @performance: Submission clinical_test 1000 23.133 26.172 -3.04
@SubmissionPerformanceTests @performance: Submission core_metadata_collection 10 1.13 0.683 0.45
@SubmissionPerformanceTests @performance: Submission demographic 1000 22.025 25.787 -3.76
@SubmissionPerformanceTests @performance: Submission diagnosis 10 0.371 0.348 0.02
@SubmissionPerformanceTests @performance: Submission diagnosis 100 2.443 2.304 0.14
@SubmissionPerformanceTests @performance: Submission diagnosis 1000 23.29 29.84 -6.55
@SubmissionPerformanceTests @performance: Submission experiment 10 4.006 0.458 3.55
@SubmissionPerformanceTests @performance: Submission experiment 1000 19.683 24.646 -4.96
@SubmissionPerformanceTests @performance: Submission experimental_metadata 10 1.967 2.093 -0.13
@SubmissionPerformanceTests @performance: Submission experimental_metadata 100 22.453 19.623 2.83
@SubmissionPerformanceTests @performance: Submission exposure 10 0.297 0.322 -0.03
@SubmissionPerformanceTests @performance: Submission exposure 100 2.47 2.671 -0.20
@SubmissionPerformanceTests @performance: Submission exposure 1000 21.958 25.032 -3.07
@SubmissionPerformanceTests @performance: Submission family_history 10 0.321 0.427 -0.11
@SubmissionPerformanceTests @performance: Submission family_history 1000 20.014 22.942 -2.93
@SubmissionPerformanceTests @performance: Submission keyword 10 0.292 0.313 -0.02
@SubmissionPerformanceTests @performance: Submission keyword 100 1.966 2.46 -0.49
@SubmissionPerformanceTests @performance: Submission keyword 1000 23.505 22.041 1.46
@SubmissionPerformanceTests @performance: Submission publication 100 2.257 2.436 -0.18
@SubmissionPerformanceTests @performance: Submission read_group 10 0.323 0.52 -0.20
@SubmissionPerformanceTests @performance: Submission read_group 1000 23.397 25.581 -2.18
@SubmissionPerformanceTests @performance: Submission read_group_qc 10 0.45 0.528 -0.08
@SubmissionPerformanceTests @performance: Submission read_group_qc 100 3.661 4.008 -0.35
@SubmissionPerformanceTests @performance: Submission read_group_qc 1000 24.12 28.931 -4.81
@SubmissionPerformanceTests @performance: Submission sample 10 0.485 0.326 0.16
@SubmissionPerformanceTests @performance: Submission sample 100 2.41 2.59 -0.18
@SubmissionPerformanceTests @performance: Submission sample 1000 23.861 26.846 -2.99
@SubmissionPerformanceTests @performance: Submission slide 10 0.348 0.325 0.02
@SubmissionPerformanceTests @performance: Submission slide 100 2.158 2.38 -0.22
@SubmissionPerformanceTests @performance: Submission slide_count 10 0.317 0.384 -0.07
@SubmissionPerformanceTests @performance: Submission slide_count 100 2.155 2.332 -0.18
@SubmissionPerformanceTests @performance: Submission slide_count 1000 20.87 24.301 -3.43
@SubmissionPerformanceTests @performance: Submission slide_image 10 1.888 2.239 -0.35
@SubmissionPerformanceTests @performance: Submission submitted_aligned_reads 10 1.957 2.136 -0.18
@SubmissionPerformanceTests @performance: Submission submitted_copy_number 10 1.941 2.243 -0.30
@SubmissionPerformanceTests @performance: Submission submitted_methylation 100 18.934 19.991 -1.06
@SubmissionPerformanceTests @performance: Submission submitted_somatic_mutation 10 1.905 2.198 -0.29

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