BDCat prod 2022.03 1647441123

gen3.biodatacatalyst.nhlbi.nih.gov/manifest.json

@@ -7,31 +7,30 @@
     "autodeploy": "yes"
   },
   "versions": {
-    "access-backend": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/access-backend:2022.01",
-    "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2022.01",
-    "audit-service": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/audit-service:2022.01",
-    "awshelper": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/awshelper:2022.01",
+    "access-backend": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/access-backend:2022.03",
+    "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2022.03",
+    "audit-service": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/audit-service:2022.03",
+    "awshelper": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/awshelper:2022.03",
     "aws-es-proxy": "quay.io/cdis/aws-es-proxy:0.8",
-    "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2022.01",
-    "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2022.01",
-    "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2022.01",
-    "pidgin": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pidgin:2022.01",
-    "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2022.01",
-    "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2022.01",
-    "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2022.01",
-    "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:2021.12",
+    "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2022.03",
+    "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2022.03",
+    "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2022.03",
+    "pidgin": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pidgin:2022.03",
+    "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2022.03",
+    "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2022.03",
+    "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2022.03",
+    "portal": "quay.io/cdis/data-portal:3.20.1",
     "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.2-debian-cloudwatch",
-    "spark": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-spark:2022.01",
-    "tube": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube:0.6.2",
-    "guppy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy:2022.01",
-    "sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:2022.01",
-    "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2022.01",
+    "spark": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-spark:2022.03",
+    "tube": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube:2022.03",
+    "guppy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy:2022.03",
+    "sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:2022.03",
+    "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2022.03",
     "ambassador": "quay.io/datawire/ambassador:1.4.2",
-    "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2022.01",
-    "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2022.01",
-    "data-ingestion-pipeline": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-ingestion-pipeline:2022.01",
-    "ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2022.01",
-    "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2022.01"
+    "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2022.03",
+    "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2022.03",
+    "ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2022.03",
+    "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2022.03"
   },
   "google": {
     "enabled": "yes"
@@ -41,7 +40,7 @@
   },
   "ssjdispatcher": {
     "job_images": {
-      "indexing": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexs3client:2022.01"
+      "indexing": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexs3client:2022.03"
     }
   },
   "arborist": {
@@ -53,7 +52,7 @@
       "action": "export",
       "container": {
         "name": "job-task",
-        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2022.01",
+        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2022.03",
         "pull_policy": "Always",
         "env": [
           {
@@ -117,7 +116,7 @@
       "action": "export-files",
       "container": {
         "name": "job-task",
-        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2022.01",
+        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2022.03",
         "pull_policy": "Always",
         "env": [
           {
@@ -208,7 +207,7 @@
     "environment": "stageprod",
     "hostname": "gen3.biodatacatalyst.nhlbi.nih.gov",
     "revproxy_arn": "arn:aws:acm:us-east-1:895962626746:certificate/472403d1-09a8-4d10-a5de-9b316f7da980",
-    "dictionary_url": "https://s3.amazonaws.com/dictionary-artifacts/gtexdictionary/4.2.0/schema.json",
+    "dictionary_url": "https://s3.amazonaws.com/dictionary-artifacts/gtexdictionary/4.2.1/schema.json",
     "portal_app": "gitops",
     "kube_bucket": "kube-stageprod-gen3",
     "logs_bucket": "logs-stageprod-gen3",

gen3.biodatacatalyst.nhlbi.nih.gov/manifests/hatchery/hatchery.json

@@ -5,7 +5,7 @@
   "sidecar": {
     "cpu-limit": "1.0",
     "memory-limit": "256Mi",
-    "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3fuse-sidecar:2022.01",
+    "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3fuse-sidecar:2022.03",
     "env": {
       "NAMESPACE": "default",
       "HOSTNAME": "gen3.biodatacatalyst.nhlbi.nih.gov"

gen3.biodatacatalyst.nhlbi.nih.gov/portal/gitops.json

@@ -213,19 +213,14 @@
         "chartType": "count",
         "title": "Projects"
       },
-      "_subject_id": {
-        "chartType": "count",
-        "title": "Subjects"
-      },
       "annotated_sex": {
         "chartType": "pie",
         "title": "Annotated Sex"
       },
       "race": {
         "chartType": "bar",
         "title": "Race"
-      },
-      "fileCounts": false
+      }
     },
     "filters": {
       "tabs": [
@@ -313,21 +308,39 @@
       ]
     },
     "dropdowns": {
-      "download": {
-        "title": "Download"
+      "sevenBridges": {
+        "title": "Export to Seven Bridges"
       }
     },
     "buttons": [
       {
         "enabled": true,
-        "type": "export",
-        "title": "Export All to Terra",
-        "rightIcon": "external-link"
+        "type": "export-pfb-to-url",
+        "targetURLTemplate": "https://cgc-interop-vayu.sbgenomics.com/import/pfb?URL={{PRESIGNED_URL}}&source=bdc",
+        "title": "Export to CGC",
+        "rightIcon": "external-link",
+        "dropdownId": "sevenBridges"
+      },
+      {
+        "enabled": true,
+        "type": "export-pfb-to-url",
+        "targetURLTemplate": "https://cav-interop-vayu.sbgenomics.com/import/pfb?URL={{PRESIGNED_URL}}&source=bdc",
+        "title": "Export to CAVATICA",
+        "rightIcon": "external-link",
+        "dropdownId": "sevenBridges"
+      },
+      {
+        "enabled": true,
+        "type": "export-pfb-to-url",
+        "targetURLTemplate": "https://bdc-interop-vayu.sbgenomics.com/import/pfb?URL={{PRESIGNED_URL}}&source=bdc",
+        "title": "Export to BDC (Seven Bridges)",
+        "rightIcon": "external-link",
+        "dropdownId": "sevenBridges"
       },
       {
         "enabled": true,
-        "type": "export-to-seven-bridges",
-        "title": "Export All to Seven Bridges",
+        "type": "export",
+        "title": "Export All to Terra",
         "rightIcon": "external-link"
       },
       {
@@ -595,15 +608,43 @@
       "accessibleValidationField": "project_id",
       "downloadAccessor": "object_id"
     },
+    "dropdowns": {
+      "sevenBridges": {
+        "title": "Export to Seven Bridges"
+      }
+    },
     "buttons": [
+      {
+        "enabled": true,
+        "type": "export-file-pfb-to-url",
+        "targetURLTemplate": "https://cgc-interop-vayu.sbgenomics.com/import/pfb?URL={{PRESIGNED_URL}}&source=bdc",
+        "title": "Export to CGC",
+        "rightIcon": "external-link",
+        "dropdownId": "sevenBridges"
+      },
+      {
+        "enabled": true,
+        "type": "export-file-pfb-to-url",
+        "targetURLTemplate": "https://cav-interop-vayu.sbgenomics.com/import/pfb?URL={{PRESIGNED_URL}}&source=bdc",
+        "title": "Export to CAVATICA",
+        "rightIcon": "external-link",
+        "dropdownId": "sevenBridges"
+      },
+      {
+        "enabled": true,
+        "type": "export-file-pfb-to-url",
+        "targetURLTemplate": "https://bdc-interop-vayu.sbgenomics.com/import/pfb?URL={{PRESIGNED_URL}}&source=bdc",
+        "title": "Export to BDC (Seven Bridges)",
+        "rightIcon": "external-link",
+        "dropdownId": "sevenBridges"
+      },
       {
         "enabled": true,
         "type": "file-manifest",
         "title": "Download Manifest",
         "leftIcon": "datafile",
         "rightIcon": "download",
-        "fileName": "file-manifest.json",
-        "dropdownId": "download"
+        "fileName": "file-manifest.json"
       },
       {
         "enabled": true,
@@ -623,12 +664,6 @@
         "type": "export-files",
         "title": "Export All to Terra",
         "rightIcon": "external-link"
-      },
-      {
-        "enabled": true,
-        "type": "export-files-to-seven-bridges",
-        "title": "Export All to Seven Bridges",
-        "rightIcon": "external-link"
       }
     ],
     "terraExportURL": "https://terra.biodatacatalyst.nhlbi.nih.gov/#import-data",
@@ -639,8 +674,7 @@
     "sevenBridgesExportURL": "https://platform.sb.biodatacatalyst.nhlbi.nih.gov/import/windmill",
     "enableLimitedFilePFBExport": {
       "sourceNodeField": "source_node"
-    },
-    "dropdowns": {}
+    }
   },
   "discoveryConfig": {
     "features": {