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Chore/deploy workspaces heal preprod (#2704)
* Deploy workspaces and 2021.03 to heal preprod * Configure hatchery.json to default jupyter-pods namespace
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,129 @@ | ||
| { | ||
| "user-namespace": "jupyter-pods", | ||
| "sub-dir": "/lw-workspace", | ||
| "user-volume-size": "10Gi", | ||
| "sidecar": { | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "256Mi", | ||
| "image": "quay.io/cdis/gen3fuse-sidecar:2021.03", | ||
| "env": { | ||
| "NAMESPACE": "default", | ||
| "HOSTNAME": "preprod.healdata.org" | ||
| }, | ||
| "args": [], | ||
| "command": [ | ||
| "/bin/bash", | ||
| "/sidecarDockerrun.sh" | ||
| ], | ||
| "lifecycle-pre-stop": [ | ||
| "su", | ||
| "-c", | ||
| "echo test", | ||
| "-s", | ||
| "/bin/sh", | ||
| "root" | ||
| ] | ||
| }, | ||
| "containers": [ | ||
| { | ||
| "target-port": 8787, | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "512Mi", | ||
| "name": "R Studio", | ||
| "image": "heliumdatastage/rstudio-server:1", | ||
| "env": { | ||
| "DISABLE_AUTH": "true" | ||
| }, | ||
| "args": [], | ||
| "path-rewrite": "/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/" | ||
| }, | ||
| { | ||
| "target-port": 8888, | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "512Mi", | ||
| "name": "Jupyter Notebook Bio Python", | ||
| "image": "quay.io/occ_data/jupyternotebook:1.9.0", | ||
| "env": {}, | ||
| "args": [ | ||
| "--NotebookApp.base_url=/lw-workspace/proxy/", | ||
| "--NotebookApp.password=''", | ||
| "--NotebookApp.token=''", | ||
| "--NotebookApp.notebook_dir='/home/jovyan/pd'", | ||
| "--NotebookApp.quit_button=False" | ||
| ], | ||
| "command": [ | ||
| "start-notebook.sh" | ||
| ], | ||
| "path-rewrite": "/lw-workspace/proxy/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/lw-workspace/proxy/", | ||
| "lifecycle-post-start": [ | ||
| "/bin/sh", | ||
| "-c", | ||
| "export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true" | ||
| ], | ||
| "user-uid": 1000, | ||
| "fs-gid": 100, | ||
| "user-volume-location": "/home/jovyan/pd" | ||
| }, | ||
| { | ||
| "target-port": 8888, | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "8192Mi", | ||
| "name": "Jupyter Notebook Power Python", | ||
| "image": "quay.io/occ_data/jupyternotebook:1.7.2", | ||
| "env": {}, | ||
| "args": [ | ||
| "--NotebookApp.base_url=/lw-workspace/proxy/", | ||
| "--NotebookApp.password=''", | ||
| "--NotebookApp.token=''", | ||
| "--NotebookApp.notebook_dir='/home/jovyan/pd'", | ||
| "--NotebookApp.quit_button=False" | ||
| ], | ||
| "command": [ | ||
| "start-notebook.sh" | ||
| ], | ||
| "path-rewrite": "/lw-workspace/proxy/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/lw-workspace/proxy/", | ||
| "lifecycle-post-start": [ | ||
| "/bin/sh", | ||
| "-c", | ||
| "export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true" | ||
| ], | ||
| "user-uid": 1000, | ||
| "fs-gid": 100, | ||
| "user-volume-location": "/home/jovyan/pd" | ||
| }, | ||
| { | ||
| "target-port": 8888, | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "8096Mi", | ||
| "name": "Helium Autoencoder Demo", | ||
| "image": "quay.io/cdis/auntoencoder-copd-demo:latest", | ||
| "env": {}, | ||
| "args": [ | ||
| "--NotebookApp.base_url=/lw-workspace/proxy/", | ||
| "--NotebookApp.password=''", | ||
| "--NotebookApp.token=''", | ||
| "--NotebookApp.notebook_dir='/home/jovyan/pd'", | ||
| "--NotebookApp.quit_button=False" | ||
| ], | ||
| "command": [ | ||
| "start-notebook.sh" | ||
| ], | ||
| "path-rewrite": "/lw-workspace/proxy/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/lw-workspace/proxy/", | ||
| "lifecycle-post-start": [ | ||
| "/bin/sh", | ||
| "-c", | ||
| "export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true" | ||
| ], | ||
| "user-uid": 1000, | ||
| "fs-gid": 100 | ||
| } | ||
| ] | ||
| } |