✂️ ⚡ Rapid haploid variant calling and core genome alignment
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Jul 19, 2024 - Perl
#
snps
Here are 11 public repositories matching this topic...
A haplotype analysis toolkit for natural variation study.
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Oct 3, 2023 - Perl
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
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Dec 26, 2023 - Perl
The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.
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May 28, 2024 - Perl
Bioinformatics analysis used to determine reinfection and relapse tuberculosis using whole genome sequencing data.
snps genomics genome-assembly whole-genome-sequencing antimicrobial-resistance mycobacterium-tuberculosis
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Sep 16, 2024 - Perl
A collection of scripts documenting the parameter settings used to apply variant discovery to the exploration of Duodenal Polyposis.
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Feb 1, 2017 - Perl
Pipeline which make phylogeny with sequence of different sample
snps pipeline biology network variants alignment snp variant phylogeny distance-matrices variant-sites network-phylogeny
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Sep 30, 2019 - Perl
Quickly identify and generate primers for diagnostic loci
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Dec 15, 2023 - Perl
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
bioinformatics snps genomics gff3 taxonomy hpc perl genome-annotation bioperl comparative-genomics genome-browser potato genome-analysis functional-annotation orthologs sequence-analysis pangenome solanaceae
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Sep 12, 2019 - Perl
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