A collection of Galaxy-related training material

Various teaching material

A modular, python-based framework for mass spectrometry. Powered by nbdev.

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant

MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

The repo for LFQ-Analyst

feseR: Combining feature selection methods for analyzing omics data

A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.

Absolute quantification package based on quantms.io

R for Mass Spectrometry documentation

Github repository for nanoSPLITS manuscript data and R scripts

A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.

Computational biology/bioinformatics workflows, codes, and concept notes on NGS data

Sequence Logo - relative style is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript.

Toolbox for Studying Bacteria, Archaea, and Complex Taxons

Joint UMAP embedding and clustering of proteomic and transcriptomic data

R client for the UniProt REST API

Web-application for Interactive Visualization of Post Translational Modifications

Deep-neural protein translation