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protein-annotation

Here are 9 public repositories matching this topic...

westlake-repl / ProTrek

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

protein-annotation protein-alignment mmseqs2 protein-prediction contrastive-learning protein-language-model protein-pretraining foldseek sequence-structure

Updated Feb 12, 2025
Python

elttaes / Revisiting-PLMs

Exploring Evolution-aware & free protein language models as protein function predictors

benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding

Updated Sep 28, 2024
Python

raghavagps / Pfeature

A software package for computing features of peptides and proteins

bioinformatics machine-learning-algorithms protein-annotation amino-acid-composition function-annotation pssm-profile

Updated Jun 7, 2024
Python

PedroMTQ / mantis

A package to annotate protein sequences

bioinformatics mantis hmmer protein-function-prediction protein-annotation

Updated Feb 23, 2025
Python

cmbi / metadome

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

genetics proteins gene-annotation genes pathogenicity variant-annotations protein-domains pathogenic-variants protein-annotation genetic-tolerance domain-homology variant-interpretation

Updated Mar 10, 2023
Python

PedroMTQ / UniFunc

Tool for similarity analysis of protein function annotations.

nlp text-mining bioinformatics bioinformatics-analysis protein-annotation

Updated Mar 2, 2022
Python

MDhewei / mFASD

Novel method for specific metal-binding sites prediction with known 3D structure.

metal-binding-prediction protein-annotation

Updated Jan 22, 2021
Python

raghavagps / exopropred

An ensemble method for predicting proteins secreted via exosomes

bioinformatics machine-learning-algorithms protein-annotation subcellular-location-prediction exosomal-proteins

Updated Oct 10, 2023
Python

holsapple / bioinformatics-hodgepodge

an assortment of bioinformatics inspired Python scripts

bioinformatics genetic-drift protein-annotation bioinformatics-tool

Updated Apr 15, 2017
Python

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