LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.

Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes

🔪⛓️ Repair nanopore assemblies using related genome(s)

A pipeline that assembles short reads into full scaffolds and automatically assigns molecular epidemiological and AMR information to the assembled genomes.

A lecture for basic genome assembly

Bioinformatics analysis used to determine reinfection and relapse tuberculosis using whole genome sequencing data.

📢🎯 Generic typing tool from amplicons and/or in silico PCR

show the genome structure variation or assembly error by pair-end or mate-pair reads

A utility to convert chromosome coordinates between different assemblies.

Elloreas, a genome assembler