Cytomine-core-legacy is the main web server implementing the Cytomine API of the legacy edition

BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

Cytomine-Web-UI is the graphical user interface for Cytomine.

Client to interact with Cytomine API in Python. Our fork includes R&D experimental features. See @cytomine for official releases.

Scripts for use with BIOMERO

This repository hosts the Cytomine Community ULiège Legacy Edition. Our fork includes R&D experimental features. See @cytomine for official releases.

Dockerfiles used to compile Cytomine docker images. Our fork includes R&D experimental features. See @cytomine for official releases.

Client to communicate with Cytomine API in Java. Our fork includes R&D experimental features. See @cytomine for official releases.

Cytomine ULiège Edition

This is a installation package of Cytomine_Python_Client-0.1.4 for python 3.6. The original one is just compatible with python 2.7, which can be cloned from https://github.com/cytomine/Cytomine-python-client

Pull annotations and the corrosponding image patches from a Cytomine server.

Hyperspectral Management System

Client to interact with Cytomine API in Javascript. Our fork includes R&D experimental features. See @cytomine for official releases.

Cytomine software for image classification with deep features (model builder)

PIMS plugin to read DICOM files

Integration of Stardist algorithm as a Cytomine task

A BioFormats wrapper for Cytomine PIMS

Cytomine App for VALIS that can register multiple images, and map annotations between them

Utility to migrate a Cytomine project from a Cytomine instance to another.