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@theiagen

Theiagen Genomics

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  1. public_health_bioinformatics public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 49 19

  2. public_health_viral_genomics public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 41 17

  3. public_health_bacterial_genomics public_health_bacterial_genomics Public

    WDL 26 14

Repositories

Showing 10 of 41 repositories
  • mycosnp-wdl Public

    A WDL wrapper of CDCGov/mycosnp-nf for Terra.bio

    theiagen/mycosnp-wdl’s past year of commit activity
    WDL 2 Apache-2.0 0 2 1 Updated Apr 3, 2025
  • public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    theiagen/public_health_bioinformatics’s past year of commit activity
    WDL 49 GPL-3.0 19 38 4 Updated Apr 3, 2025
  • RefNAAP-wdl Public

    WDL wrapper around https://github.com/jiangweiyao/RefNAAP

    theiagen/RefNAAP-wdl’s past year of commit activity
    HTML 0 Apache-2.0 0 2 0 Updated Apr 3, 2025
  • theiaphylo Public

    A collection of python-based phylogenetic analysis and comparison tools

    theiagen/theiaphylo’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 2, 2025
  • theiavalidate Public

    A Python tool to compare the contents of two tab-delimited files.

    theiagen/theiavalidate’s past year of commit activity
    Python 2 GPL-3.0 1 1 0 Updated Apr 2, 2025
  • mbap-bacteria Public
    theiagen/mbap-bacteria’s past year of commit activity
    Nextflow 0 0 0 0 Updated Apr 2, 2025
  • NE-PGCOE-Support Public

    Theiagen support for NorthEast Pathogen Genomic Center of Excellence efforts

    theiagen/NE-PGCOE-Support’s past year of commit activity
    0 0 0 0 Updated Apr 1, 2025
  • Mid-Atlantic-Docker4PH-2025 Public

    Resource for Mid-Atlantic's Docker for Public Health Bioinformatics 2025 Training Event

    theiagen/Mid-Atlantic-Docker4PH-2025’s past year of commit activity
    Dockerfile 0 0 0 1 Updated Apr 1, 2025
  • mercury Public

    Mercury prepares and formats metadata for submission to national & international genomic databases.

    theiagen/mercury’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Mar 31, 2025
  • Northeast-SDP4PHB-2025 Public

    About Resource for Northeast's Software Development Practices for Public Health Bioinformatics 2025 Training Event

    theiagen/Northeast-SDP4PHB-2025’s past year of commit activity
    Nextflow 1 GPL-3.0 1 0 11 Updated Mar 31, 2025
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