checkout upstream

Signed-off-by: Asish Kumar <officialasishkumar@gmail.com>

.github/workflows/benchmarks.yml

@@ -66,6 +66,11 @@ jobs:
           path: benchmarks/data/kurucz_cd23_chianti_H_He.h5
           key: atom-data
 
+      - name: Copy atom data to refdata
+        run: |
+          mkdir -p tardis-refdata/atom_data
+          cp benchmarks/data/kurucz_cd23_chianti_H_He.h5 tardis-refdata/atom_data/
+
       - name: Setup Mamba
         uses: mamba-org/setup-micromamba@v1
         with:
@@ -115,15 +120,12 @@ jobs:
           target-branch: main
           target-directory: .asv
 
-      - name: Compare HEAD with master if PR
+      - name: Run benchmarks
         if: github.event_name == 'pull_request_target'
-        continue-on-error: true # TODO: step failed sporadically while testing
-        run: |
-          asv continuous ${{ github.event.pull_request.base.sha }} ${{ github.event.pull_request.head.sha }} | tee asv-cont-output.log  
-          if grep -q failed asv-cont-output.log; then 
-            echo "Some benchmarks have errors!"
-            exit 1
-          fi
+        run: asv run --config asv.conf.json
+
+      - run: git remote add upstream https://github.com/tardis-sn/tardis.git
+      - run: git fetch upstream master
 
       - name: Compare Master and PR head
         run: asv compare upstream/master HEAD --config asv.conf.json | tee asv-compare-output.log
@@ -153,29 +155,6 @@ jobs:
             echo "Some benchmarks have failed!"
             exit 1
           fi
-
-      - name: Generate Graphs and HTML of PR
-        if: github.event_name == 'pull_request_target'
-        working-directory: PR-${{ github.event.number }}
-        run: asv publish
-
-      - name: Delete env files of PR
-        if: github.event_name == 'pull_request_target'
-        run: rm -r PR-${{ github.event.number }}/.asv/env
-
-      - name: Push results of PR to results repository
-        if: github.event_name == 'pull_request_target'
-        continue-on-error: true
-        uses: cpina/github-action-push-to-another-repository@main 
-        env:
-          API_TOKEN_GITHUB: ${{ secrets.BOT_TOKEN }}
-        with:
-          source-directory: PR-${{ github.event.number }}
-          destination-github-username: tardis-sn
-          destination-repository-name: tardis-benchmarks
-          user-email: tardis.sn.bot@gmail.com
-          target-branch: main
-          target-directory: PR
       
       - name: Find Comment
         if: always() && github.event_name == 'pull_request_target'
@@ -227,6 +206,28 @@ jobs:
           name: asv-benchmark-results-${{ runner.os }}
           path: |
             .asv/results
-            asv-cont-output.log  
             asv-compare-output.log
             asv-compare-changed-output.log
+
+      - name: Generate Graphs and HTML of PR
+        if: github.event_name == 'pull_request_target'
+        working-directory: PR-${{ github.event.number }}
+        run: asv publish
+
+      - name: Delete env files of PR
+        if: github.event_name == 'pull_request_target'
+        run: rm -r PR-${{ github.event.number }}/.asv/env
+
+      - name: Push results of PR to results repository
+        if: github.event_name == 'pull_request_target'
+        continue-on-error: true
+        uses: cpina/github-action-push-to-another-repository@main 
+        env:
+          API_TOKEN_GITHUB: ${{ secrets.BOT_TOKEN }}
+        with:
+          source-directory: PR-${{ github.event.number }}
+          destination-github-username: tardis-sn
+          destination-repository-name: tardis-benchmarks
+          user-email: tardis.sn.bot@gmail.com
+          target-branch: main
+          target-directory: PR