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@som-shahlab

som-shahlab

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  1. medalign medalign Public

    MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

    94 9

  2. ehrshot-benchmark ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    Jupyter Notebook 162 18

  3. femr femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    Python 137 23

  4. trove trove Public

    Weakly supervised medical named entity classification

    Python 73 21

  5. meds_reader meds_reader Public

    C++ 18

Repositories

Showing 10 of 52 repositories
  • INSPECT_public Public

    INSPECT dataset/benchmark paper, accepted by NeurIPS 2023

    som-shahlab/INSPECT_public’s past year of commit activity
    Python 28 Apache-2.0 2 6 0 Updated Apr 15, 2025
  • med-s1 Public Forked from simplescaling/s1

    s1: Simple test-time scaling

    som-shahlab/med-s1’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 724 0 0 Updated Apr 11, 2025
  • factehr Public
    som-shahlab/factehr’s past year of commit activity
    Python 18 0 0 0 Updated Apr 11, 2025
  • aplusml Public

    APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models

    som-shahlab/aplusml’s past year of commit activity
    Jupyter Notebook 21 Apache-2.0 4 4 0 Updated Apr 3, 2025
  • femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    som-shahlab/femr’s past year of commit activity
    Python 137 Apache-2.0 23 5 2 Updated Apr 2, 2025
  • TIMER Public
    som-shahlab/TIMER’s past year of commit activity
    Python 1 0 0 0 Updated Mar 27, 2025
  • ehrshot-website Public

    Public website for EHRSHOT

    som-shahlab/ehrshot-website’s past year of commit activity
    SCSS 1 MIT 1 0 0 Updated Mar 18, 2025
  • hf_ehr Public

    Taking off-the-shelf HuggingFace models and training them on EHR data

    som-shahlab/hf_ehr’s past year of commit activity
    Jupyter Notebook 20 Apache-2.0 6 1 0 Updated Mar 10, 2025
  • clinical_trial_patient_matching Public

    Zero-shot clinical trial matching with LLMs

    som-shahlab/clinical_trial_patient_matching’s past year of commit activity
    Python 11 4 0 0 Updated Mar 1, 2025
  • motor_tutorial Public

    Tutorial repository for the official MOTOR release

    som-shahlab/motor_tutorial’s past year of commit activity
    Jupyter Notebook 10 Apache-2.0 0 0 0 Updated Feb 22, 2025
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