Add the comment on glyco-searching and the search summary on the result file #2367
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## master #2367 +/- ##
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Coverage 93.65% 93.65%
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Files 140 140
Lines 21896 21896
Branches 3005 3005
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Hits 20506 20506
Misses 934 934
Partials 456 456 |
…Psms, Level1-glycoPsms) into the "AllResult.txt" file for glycoSearch (1) adding text function in PostGlycoSearchAnalysisTask class (2) adding tester in TestOGlyco class (make sure we parse the certain value) (3) revise the "readCsv", enable to read the allPSMs file smoothly.
RayMSMS
added
ready for review
and removed
WIP
RayMSMS
changed the title
…aMorpheus into glyco-search-comment
We also allow to get the same PSMs in duplicated files.
Alexander-Sol
approved these changes
Jun 13, 2024
(1) Rewrite the Summary writing function (2)Add the <summary> comment in the fuction header
…aMorpheus into glyco-search-comment
1. add new tester model for "OGlycanCompositionFragments"
1. add the tester for writing function, in different search type 2. glycoBox tester for decoy glycanBox
1. delete the bin and retry to pass the tester
deleted the duplicate tester
elaboy
approved these changes
Aug 6, 2024
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Add lei's comment on the coding of o-pair searching.
Try to add the search summary information (PSMs, protein group, glycoPsms, Level1-glycoPsms) into the "AllResult.txt" file for glycoSearch
(1) Text function in PostGlycoSearchAnalysisTask class
(2) Tester in TestOGlyco class (make sure we parse the certain value)
(3) revise the "readCsv", and enable it to read the allPSMs file smoothly.