Merge branch 'u/mkoeppe/fix_tox_docker_builds' of git://trac.sagemath…

….org/sage into public/33878
sagemath · Jun 2, 2022 · b494326 · b494326
2 parents 481d782 + 11a0e57
commit b494326
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diff --git a/.github/workflows/ci-conda.yml b/.github/workflows/ci-conda.yml
@@ -43,15 +43,8 @@ jobs:
           bash ~/miniconda.sh -b -p $HOME/miniconda
           echo "CONDA=$HOME/miniconda" >> $GITHUB_ENV
 
-      - name: Install bootstrap prerequisites
-        run: |
-          export PATH="$(pwd)/build/bin:$PATH"
-          SYSTEM=$(sage-guess-package-system)
-          eval $(sage-print-system-package-command $SYSTEM --sudo install $(sage-get-system-packages $SYSTEM _bootstrap))
-
-      # Create conda environment file
-      - name: Bootstrap
-        run: ./bootstrap
+      - name: Create conda environment files
+        run: ./bootstrap-conda
 
       - name: Cache conda packages
         uses: actions/cache@v2
@@ -80,6 +73,7 @@ jobs:
         shell: bash -l {0}
         continue-on-error: true
         run: |
+          ./bootstrap
           echo "::add-matcher::.github/workflows/configure-systempackage-problem-matcher.json"
           ./configure --enable-build-as-root --with-python=$CONDA_PREFIX/bin/python --prefix=$CONDA_PREFIX $(for pkg in $(./sage -package list :standard: --has-file spkg-configure.m4 --has-file distros/conda.txt); do echo --with-system-$pkg=force; done)
           echo "::remove-matcher owner=configure-system-package-warning::"
@@ -88,8 +82,8 @@ jobs:
       - name: Build
         shell: bash -l {0}
         run: |
-          pip install --no-build-isolation -v -v -e pkgs/sage-conf pkgs/sage-setup 
-          pip install --no-build-isolation -v -v -e src
+          pip install --no-build-isolation -v -v -e ./pkgs/sage-conf ./pkgs/sage-setup
+          pip install --no-build-isolation -v -v -e ./src
         env:
           SAGE_NUM_THREADS: 2
 

diff --git a/.github/workflows/ci-cygwin-minimal.yml b/.github/workflows/ci-cygwin-minimal.yml
@@ -48,7 +48,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -108,7 +108,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -180,7 +180,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -250,7 +250,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -318,7 +318,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -386,7 +386,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -454,7 +454,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -526,7 +526,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -598,7 +598,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -670,7 +670,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -740,7 +740,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -808,7 +808,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -876,7 +876,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -944,7 +944,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -1012,7 +1012,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash

diff --git a/.github/workflows/ci-cygwin-standard.yml b/.github/workflows/ci-cygwin-standard.yml
@@ -48,7 +48,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -108,7 +108,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -180,7 +180,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -250,7 +250,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -318,7 +318,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -386,7 +386,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -454,7 +454,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -526,7 +526,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -598,7 +598,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -670,7 +670,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -740,7 +740,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -808,7 +808,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -876,7 +876,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -944,7 +944,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash
@@ -1012,7 +1012,7 @@ jobs:
     - name: tox
       run: |
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cat /proc/cpuinfo'
-        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox'
+        C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.9 -m pip install tox'
         C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS'
     - name: Prepare logs artifact
       shell: bash

diff --git a/.gitignore b/.gitignore
@@ -23,6 +23,7 @@
 /environment.yml
 /environment-optional.yml
 /src/environment.yml
+/src/environment-dev.yml
 /src/environment-optional.yml
 
 /src/setup.cfg

diff --git a/.lgtm.yml b/.lgtm.yml
@@ -6,6 +6,7 @@ queries:
 path_classifiers:
   imports_only:
     - "**/all.py"
+    - "**/all_*.py"
     - "**/*catalog*.py"
     - "**/species/library.py"
     - "**/categories/basic.py"

diff --git a/.vscode/launch.json b/.vscode/launch.json
@@ -1,6 +1,17 @@
 {
     "version": "0.2.0",
     "configurations": [
+        {
+            "name": "Sage: Pytest",
+            "type": "python",
+            "request": "launch",
+            "module": "pytest",
+            "args": [
+                "${file}"
+            ],
+            "console": "integratedTerminal",
+            "justMyCode": false
+        },
         {
             "name": "Python: Current File",
             "type": "python",
@@ -22,4 +33,4 @@
             "justMyCode": false
         }
     ],
-}
+}
diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -16,7 +16,13 @@
     },
     "python.testing.pytestEnabled": true,
     "python.testing.pytestArgs": [
-        "src"
+        "--rootdir=src/sage",
+        "-c=src/tox.ini",
+        "--doctest-modules",
     ],
     "python.testing.unittestEnabled": false,
+    "cSpell.words": [
+        "Conda",
+        "Cython"
+    ],
 }
diff --git a/.zenodo.json b/.zenodo.json
@@ -1,10 +1,10 @@
 {
     "description": "Mirror of the Sage https://sagemath.org/ source tree", 
     "license": "other-open", 
-    "title": "sagemath/sage: 9.6", 
-    "version": "9.6", 
+    "title": "sagemath/sage: 9.7.beta1", 
+    "version": "9.7.beta1", 
     "upload_type": "software", 
-    "publication_date": "2022-05-15", 
+    "publication_date": "2022-05-26", 
     "creators": [
         {
             "affiliation": "SageMath.org", 
@@ -15,7 +15,7 @@
     "related_identifiers": [
         {
             "scheme": "url", 
-            "identifier": "https://github.com/sagemath/sage/tree/9.6", 
+            "identifier": "https://github.com/sagemath/sage/tree/9.7.beta1", 
             "relation": "isSupplementTo"
         }, 
         {