AvrBsT

Statistical analysis of bacterial dispersal in R

The master branch has evolving code. Use snapshot branch for code used in the paper.

Name	Name	Last commit message	Last commit date
Latest commit rknx integrate svg into index Dec 14, 2020 2e4dfad · Dec 14, 2020 History 122 Commits
.vscode	.vscode	optimize vscode with excludes	Jun 9, 2020
Out	Out	integrate svg into index	Dec 14, 2020
.Rprofile	.Rprofile	added fontpath	Jun 9, 2020
.gitignore	.gitignore	added rsconnect	Dec 11, 2020
.lintr	.lintr	updated project management	Nov 30, 2020
0 - prerequisites.R	0 - prerequisites.R	Rerun updates for publication	Nov 30, 2020
1 - dataprep - weather.R	1 - dataprep - weather.R	source and setwd moved to .Rprofile	Jun 3, 2020
2 - dataprep - bacteria.R	2 - dataprep - bacteria.R	numerical dir	Jun 17, 2020
3 - dataprep - CFU.R	3 - dataprep - CFU.R	initialize CFU for lag	Jun 6, 2020
4 - dataprep - severity.R	4 - dataprep - severity.R	Rerun updates for publication	Nov 30, 2020
5 - dataprerp - lag.R	5 - dataprerp - lag.R	Use less days	Dec 1, 2020
6 - dataprep - formula.R	6 - dataprep - formula.R	separated formula selector, added cluster code	Jun 9, 2020
7 - model - presence.R	7 - model - presence.R	separated confidence interval plot	Dec 11, 2020
README.md	README.md	Update README.md	Jun 1, 2020
animation.R	animation.R	fine tune	Dec 14, 2020
app.R	app.R	fine tune	Dec 14, 2020
crossvalidation.R	crossvalidation.R	Rerun updates for publication	Nov 30, 2020
fidelity.R	fidelity.R	Rerun updates for publication	Nov 30, 2020
goftest.R	goftest.R	taub to tauc	Dec 11, 2020
model.rda	model.rda	final model	Dec 14, 2020
prediction.R	prediction.R	prepare prediction for shiny	Dec 11, 2020
selection.R	selection.R	Rerun updates for publication	Nov 30, 2020
sessionInfo.txt	sessionInfo.txt	sessionInfo	Nov 30, 2020
simulation.R	simulation.R	Rerun updates for publication	Nov 30, 2020
threeD.R	threeD.R	fine tune	Dec 14, 2020
weatherRange.R	weatherRange.R	added mean	Dec 1, 2020
weatherScale.rda	weatherScale.rda	weather scale	Dec 14, 2020

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