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UCL Bioinformatics Group

UCL bioinformatics group repositories

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  1. protein-vae protein-vae Public

    Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies

    Python 86 17

  2. DMPfold DMPfold Public

    De novo protein structure prediction using iteratively predicted structural constraints

    C 57 16

  3. cgdms cgdms Public

    Differentiable molecular simulation of proteins with a coarse-grained potential

    Python 55 4

  4. psipred psipred Public

    PSIPRED Protein Secondary Structure Predictor

    Java 54 12

  5. s4pred s4pred Public

    A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

    Python 54 10

  6. DMPfold2 DMPfold2 Public

    Fast and accurate protein structure prediction

    Python 51 12

Repositories

Showing 10 of 50 repositories
  • PFP Public
    Python 0 0 0 0 Updated Apr 25, 2025
  • psipred_react Public

    A react port of the psipred_webserver dynamic pages

    JavaScript 1 0 1 0 Updated Apr 10, 2025
  • cgdms Public

    Differentiable molecular simulation of proteins with a coarse-grained potential

    Python 55 MIT 4 0 0 Updated Apr 3, 2025
  • s4pred Public

    A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

    Python 54 GPL-3.0 10 1 0 Updated Apr 2, 2025
  • merizo_search Public

    Fast protein domain structure embedding+search tool

    Python 17 GPL-3.0 3 0 0 Updated Apr 1, 2025
  • ansible_rocky Public

    new, united ansible repo for rocky machines

    Shell 0 0 0 0 Updated Mar 25, 2025
  • memsat-svm-pore Public

    The version of memsat-svm that also predicts pore lining residues

    Perl 0 0 0 0 Updated Mar 25, 2025
  • DMPmetal Public

    repository for the DMPmetal metal binding site predictor

    Python 0 0 0 0 Updated Mar 20, 2025
  • ted-tools Public

    ML toolset for creating TED: The Encyclopedia of Domains

    Python 18 MIT 4 1 0 Updated Mar 19, 2025
  • GsRCL Public

    repository for the GsRCL cell type identifier

    Python 0 0 0 0 Updated Mar 18, 2025