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@parklab

Park Lab at Harvard Medical School

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  1. nozzle Public

    Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

    R 68 21

  2. NGSCheckMate Public

    Software program for checking sample matching for NGS data

    Python 132 54

  3. SigMA Public

    Mutational signature analysis for low statistics SNV data

    R 63 21

Repositories

Showing 10 of 41 repositories
  • parklab.github.io Public
    HTML 0 1 0 1 Updated May 15, 2025
  • SCAN2 Public

    SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

    Python 12 6 12 0 Updated May 10, 2025
  • NMF_jointMU Public
    0 MIT 0 0 0 Updated May 7, 2025
  • r-scan2 Public

    R package supporting the SCAN2 pipeline

    R 0 4 1 0 Updated May 7, 2025
  • xTea Public

    Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

    Python 110 22 8 2 Updated Apr 18, 2025
  • HiScanner Public
    C 7 MIT 1 2 0 Updated Apr 4, 2025
  • hiscanner_demo Public
    2 MIT 0 1 0 Updated Feb 8, 2025
  • bamsnap Public
    HTML 120 MIT 26 20 0 Updated Nov 8, 2024
  • SPECIFICANCER_data Public
    JavaScript 0 MIT 0 0 0 Updated Sep 20, 2024
  • Salamander Public

    Salamander is a non-negative matrix factorization framework for signature analysis

    Python 9 MIT 0 0 0 Updated Aug 30, 2024
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