Skip to content

@cbil-vt CBIL Lab at Virginia Tech

Change the repository type filter

All

    Repositories list

    16 repositories

    • iDDN

      Public
      Multi-omics differential dependency network inference
      bioinformaticslasso-regressionbiological-networksmulti-omicsgene-regulatory-network
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • iddn_paper

      Public
      The package for the simulation and figure drawing of the iDDN paper.
      Python
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • iddn_experiments_r

      Public
      R based experiments of iDDN
      R
      •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • iddn_experiments

      Public
      Experiments for the iDDN paper
      Jupyter Notebook
      •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • DDN3_simulation

      Public
      Simulation studies for DDN3 paper
      Jupyter Notebook
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • jgl_modified

      Public
      A corrected version of JGL
      R
      •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • CAM3

      Public
      A new and fast version of debCAM
      HTML
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • DDN3

      Public
      Differential Dependency Network
      gene-expressiongraphical-modelsnetwork-analysisprotein-expression
      Python
      •
      MIT License
      •0•2•0•0•Updated Aug 27, 2024Aug 27, 2024

    • Cosbin

      Public
      This is the repository for our application: Cosbin (Cosine score based iterative normalization of biologically diverse samples)
      R
      •1•0•0•0•Updated Mar 21, 2024Mar 21, 2024

    • .github

      Public
      0•0•0•0•Updated Jan 18, 2024Jan 18, 2024

    • COT

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Mar 29, 2022Mar 29, 2022

    • debCAM

      Public
      R
      •7•0•0•0•Updated May 12, 2021May 12, 2021

    • swCAM

      Public
      Sample-specific deconvolution (debCAM2.0)
      R
      •4•0•0•0•Updated Mar 7, 2021Mar 7, 2021

    • ncGTW

      Public
      Profile Alignment by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection
      R
      •2•0•0•0•Updated Dec 30, 2019Dec 30, 2019

    • kddn-cytoscape

      Public
      KDDN app for Cytoscape
      Java
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Dec 17, 2019Dec 17, 2019

    • OVESEG

      Public
      OVESEG-test to detect tissue/cell-specific marker genes
      R
      •1•0•0•0•Updated Jan 15, 2019Jan 15, 2019