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    211 repositories

    • ensembl-genes-metadata

      Public
      Perl
      •
      Apache License 2.0
      •0•1•2•1•Updated Mar 13, 2025Mar 13, 2025

    • ensembl-production-imported

      Public
      Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
      Perl
      •
      Apache License 2.0
      •4•1•0•1•Updated Mar 13, 2025Mar 13, 2025

    • ensembl-biomart

      Public
      Code to build the ensembl and ensembl genomes marts
      Perl
      •8•3•0•1•Updated Mar 13, 2025Mar 13, 2025

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •47•9•0•3•Updated Mar 13, 2025Mar 13, 2025

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •0•1•0•2•Updated Mar 13, 2025Mar 13, 2025

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •51•22•0•0•Updated Mar 13, 2025Mar 13, 2025

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •29•5•0•3•Updated Mar 13, 2025Mar 13, 2025

    • nextflow_modules

      Public
      A collection of shared Ensembl modules used in NextFlow pipelines
      Nextflow
      •0•2•0•2•Updated Mar 13, 2025Mar 13, 2025

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •43•11•0•7•Updated Mar 12, 2025Mar 12, 2025

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •69•52•0•5•Updated Mar 12, 2025Mar 12, 2025

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Mar 12, 2025Mar 12, 2025

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •3•2•0•1•Updated Mar 12, 2025Mar 12, 2025

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •56•28•0•11•Updated Mar 10, 2025Mar 10, 2025

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•13•0•1•Updated Mar 8, 2025Mar 8, 2025

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•18•0•0•Updated Mar 7, 2025Mar 7, 2025

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•1•Updated Mar 7, 2025Mar 7, 2025

    • plant-scripts

      Public
      Scripting analyses of genomes in Ensembl Plants
      Perl
      •
      Apache License 2.0
      •9•39•1•0•Updated Mar 6, 2025Mar 6, 2025

    • ensembl-metadata

      Public
      API for storing and querying metadata from Ensembl and EnsemblGenomes
      Perl
      •
      Apache License 2.0
      •6•5•0•1•Updated Mar 6, 2025Mar 6, 2025

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •120•144•5•2•Updated Mar 6, 2025Mar 6, 2025

    • ensembl-otter

      Public
      annosoft
      Perl
      •3•3•0•0•Updated Mar 6, 2025Mar 6, 2025

    • ensembl-vdm-docs

      Public
      Variation data modelling documentation repository
      Apache License 2.0
      •1•0•5•0•Updated Mar 5, 2025Mar 5, 2025

    • ensembl-echo

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •3•4•0•1•Updated Mar 3, 2025Mar 3, 2025

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •1•1•0•0•Updated Mar 3, 2025Mar 3, 2025

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •7•9•0•2•Updated Feb 25, 2025Feb 25, 2025

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •157•472•52•6•Updated Feb 25, 2025Feb 25, 2025

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •77•81•1•1•Updated Feb 24, 2025Feb 24, 2025

    • gene_symbol_transformer

      Public
      Transformer model for gene symbol assignment of protein coding sequences
      Python
      •
      Apache License 2.0
      •0•3•0•9•Updated Feb 23, 2025Feb 23, 2025

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•9•2•Updated Feb 20, 2025Feb 20, 2025

    • ensembl-utils

      Public
      Ensembl python utils
      Python
      •
      Apache License 2.0
      •3•3•0•0•Updated Feb 18, 2025Feb 18, 2025