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@olopade-lab

olopade-lab

GitHub repository of informatics team at Dr. Funmi Olopade's laboratory

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  1. COMIRI COMIRI Public

    Jupyter Notebook 2

  2. geomx_deconvolution geomx_deconvolution Public

    R 2

  3. sv-pipeline sv-pipeline Public

    Implementation of multiple somatic structural variant callers integrated with parallel threads execution and capability to merge multiple VCF files.

    Python 1

  4. indel-filtering indel-filtering Public

    Jupyter Notebook

  5. query-gdc query-gdc Public

    Jupyter Notebook

  6. mutational-signatures mutational-signatures Public

    Jupyter Notebook

Repositories

Showing 10 of 34 repositories
  • duke-dbt-data_forked Public Forked from subomiomoleye/duke-dbt-data

    Forked repository of duke-dbt-data

    olopade-lab/duke-dbt-data_forked’s past year of commit activity
    Jupyter Notebook 0 17 0 0 Updated May 17, 2023
  • dicognito Public Forked from blairconrad/dicognito

    A library and command line tool for anonymizing DICOM files

    olopade-lab/dicognito’s past year of commit activity
    Python 0 MIT 7 0 0 Updated Jul 7, 2022
  • mirai_validation Public

    Repository for validating Mirai, a DL mammography based breast cancer risk prediction tool, in the ChiMEC cohort.

    olopade-lab/mirai_validation’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 17, 2022
  • msn Public Forked from facebookresearch/msn

    Masked Siamese Networks for Label-Efficient Learning (https://arxiv.org/abs/2204.07141)

    olopade-lab/msn’s past year of commit activity
    Python 0 33 0 0 Updated May 6, 2022
  • transformer-ls Public Forked from NVIDIA/transformer-ls

    Official implementation of Long-Short Transformer in PyTorch.

    olopade-lab/transformer-ls’s past year of commit activity
    Python 0 MIT 35 0 0 Updated Apr 12, 2022
  • mae Public Forked from facebookresearch/mae

    PyTorch implementation of MAE https//arxiv.org/abs/2111.06377

    olopade-lab/mae’s past year of commit activity
    Python 0 1,256 0 0 Updated Apr 10, 2022
  • COMIRI Public
    olopade-lab/COMIRI’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Mar 17, 2022
  • esvit Public Forked from microsoft/esvit

    EsViT: Efficient self-supervised Vision Transformers

    olopade-lab/esvit’s past year of commit activity
    Python 0 MIT 44 0 0 Updated Jan 30, 2022
  • pycox Public Forked from havakv/pycox

    Survival analysis with PyTorch

    olopade-lab/pycox’s past year of commit activity
    Python 0 BSD-2-Clause 196 0 0 Updated Jan 21, 2022
  • lightning-bolts Public Forked from Lightning-Universe/lightning-bolts

    Toolbox of models, callbacks, and datasets for AI/ML researchers.

    olopade-lab/lightning-bolts’s past year of commit activity
    Python 0 Apache-2.0 327 0 0 Updated Oct 5, 2021
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