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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu Public

    Decision-driven action launching system

    Java 9 5

  2. djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 11 7

  3. vidarr Public

    Analysis provenance tracking server

    Java 2 2

  4. data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python 1 1

Repositories

Showing 10 of 249 repositories
  • cerberus Public

    File provenance library

    Java 0 MIT 0 0 0 Updated Jul 4, 2025
  • shesmu Public

    Decision-driven action launching system

    Java 9 MIT 5 0 1 Updated Jul 4, 2025
  • vidarr Public

    Analysis provenance tracking server

    Java 2 MIT 2 0 2 Updated Jul 4, 2025
  • pinery-reports Public

    Reports based on data from Pinery

    Java 0 LGPL-3.0 1 0 1 Updated Jul 4, 2025
  • dimsum Public

    QC Tracking dashboard

    Java 1 GPL-3.0 0 0 0 Updated Jul 4, 2025
  • cBioPortal_Importer Public

    Scripts to facilitate loading data into cBioPortal

    Python 0 0 0 0 Updated Jul 3, 2025
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 11 GPL-3.0 7 8 3 Updated Jul 2, 2025
  • djerbaReportGenerator Public

    a workflow for generation of Djerba Clinical Reports (generally), for RUO clinical reports (specifically)

    Python 0 0 0 0 Updated Jul 2, 2025
  • nabu Public

    QC tracking for files via a web service

    JavaScript 0 MIT 0 2 0 Updated Jun 30, 2025
  • cardea Public

    Case data API

    Java 0 Apache-2.0 0 0 0 Updated Jun 30, 2025
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