Merge pull request #207 from nextstrain/update-augur-read-strains

Update use of `augur.utils.read_strains` to `augur.io.read_strains`
nextstrain · Feb 10, 2025 · a61365f · a61365f
2 parents 41fda55 + e03b6f0
commit a61365f
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diff --git a/scripts/calculate_epiweek.py b/scripts/calculate_epiweek.py
@@ -1,7 +1,7 @@
 #!/usr/bin/env python3
 import argparse
-from augur.io import read_metadata
-from augur.utils import read_strains, write_json
+from augur.io import read_metadata, read_strains
+from augur.utils import write_json
 import epiweeks
 import pandas as pd
 

diff --git a/scripts/plot_antigenic_distances_between_strains.py b/scripts/plot_antigenic_distances_between_strains.py
@@ -5,7 +5,8 @@
 
 import argparse
 
-from augur.utils import read_colors, read_strains
+from augur.io import read_strains
+from augur.utils import read_colors
 import json
 import matplotlib as mpl
 import matplotlib.pyplot as plt