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Merge branch 'ar/update-changelog0.1.12' into 'master'
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Updates changelog.

See merge request machine-learning/modkit!76
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ArtRand committed Jul 27, 2023
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Expand Up @@ -4,6 +4,13 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [v0.1.12]
## Fixes
- [extract] no longer requires an index to use `--num-reads`, it will just take the first `--num-reads` reads if no index is found.
## Adds
- New command `modkit repair` allows projecting base modifiction calls from one modBAM onto another where the reads have beem trimmed or clipped.
- `adjust-mods`, `update-tags`, `sample-probs`, `summary`, `call-mods` and `extract` can now be used with standard input/output streams.

## [v0.1.11]
### Fixes
- [extract] Correctly handles duplex modBAMs when using `--include-bed`
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