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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 241 54

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 55 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 3

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 21 6

Repositories

Showing 10 of 248 repositories
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 241 CC-BY-4.0 54 406 (2 issues need help) 56 Updated Feb 23, 2025
  • medgen Public

    MedGen ingest.

    monarch-initiative/medgen’s past year of commit activity
    Python 2 0 9 0 Updated Feb 23, 2025
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 66 5 Updated Feb 23, 2025
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 7 3 229 (1 issue needs help) 11 Updated Feb 22, 2025
  • aurelian Public
    monarch-initiative/aurelian’s past year of commit activity
    Python 2 MIT 0 0 1 Updated Feb 22, 2025
  • curategpt Public

    LLM-driven curation assist tool

    monarch-initiative/curategpt’s past year of commit activity
    Jupyter Notebook 80 BSD-3-Clause 12 31 5 Updated Feb 22, 2025
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 653 BSD-3-Clause 88 63 8 Updated Feb 21, 2025
  • monarch-phenologs Public
    monarch-initiative/monarch-phenologs’s past year of commit activity
    Python 3 BSD-3-Clause 0 14 0 Updated Feb 21, 2025
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Python 5 MIT 1 10 0 Updated Feb 21, 2025
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 22 BSD-3-Clause 4 14 1 Updated Feb 21, 2025
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