Move logging shutdown to test file

Author: RachelDuffin

README.md

@@ -83,6 +83,8 @@ options:
 
 ### Testing
 
+This repository currently has **92% test coverage**.
+
 Test datasets are stored in [/test/data](../test/data). The script has a full test suite:
 * [test_samplesheet_validator.py](../test/test_samplesheet_validator.py)
 

setup.py

@@ -5,7 +5,7 @@
     name="samplesheet_validator",
     version=git_tag(),
     description="Python library for samplesheet validation",
-    url="https://github.com/moka-guys/samplesheet_validator/tree/feature/fix_stream_handler",
+    url="https://github.com/moka-guys/samplesheet_validator",
     author="Rachel Duffin",
     author_email="rachel.duffin2@nhs.net",
     license="Apache License, Version 2.0",

test/test_samplesheet_validator.py

@@ -10,6 +10,17 @@
 from samplesheet_validator.__main__ import is_valid_dir, is_valid_file
 
 
+def shutdown_logs(logger: object) -> None:
+    """
+    To prevent duplicate filehandlers and system handlers close
+    and remove all handlers for a logging object
+        :return (None):
+    """
+    for handler in logger.handlers[:]:
+        logger.removeHandler(handler)
+        handler.close()
+
+
 def get_sscheck_obj(samplesheet: str) -> object:
     """
     Function to retrieve a samplesheet check object and carry out the