Remove logging shutdown

Author: RachelDuffin

samplesheet_validator/samplesheet_validator.py

@@ -14,7 +14,7 @@
 import re
 from typing import Union
 from . import config
-from .ss_logger import SSLogger, shutdown_logs
+from .ss_logger import SSLogger
 from seglh_naming.sample import Sample
 from seglh_naming.samplesheet import Samplesheet
 
@@ -155,7 +155,6 @@ def ss_checks(self) -> None:
                                     self.check_pannos(sample, column, sample_obj)
                         self.check_tso()
         self.log_summary()
-        shutdown_logs(self.logger)
 
     def check_ss_present(self) -> Union[bool, None]:
         """

samplesheet_validator/ss_logger.py

@@ -22,17 +22,6 @@ def set_root_logger():
     logger.addHandler(stream_handler)
 
 
-def shutdown_logs(logger: object) -> None:
-    """
-    To prevent duplicate filehandlers and system handlers close
-    and remove all handlers for a logging object
-        :return (None):
-    """
-    for handler in logger.handlers[:]:
-        logger.removeHandler(handler)
-        handler.close()
-
-
 class SSLogger:
     """
     Creates a python logging object with a file handler and syslog handler

setup.py

@@ -5,7 +5,7 @@
     name="samplesheet_validator",
     version=git_tag(),
     description="Python library for samplesheet validation",
-    url="http://github.com/moka-guys/samplesheet_validator",
+    url="https://github.com/moka-guys/samplesheet_validator/tree/feature/fix_stream_handler",
     author="Rachel Duffin",
     author_email="rachel.duffin2@nhs.net",
     license="Apache License, Version 2.0",

test/test_samplesheet_validator.py

@@ -6,7 +6,6 @@
 import os
 import argparse
 import pytest
-from samplesheet_validator.ss_logger import shutdown_logs
 from samplesheet_validator import samplesheet_validator
 from samplesheet_validator.__main__ import is_valid_dir, is_valid_file