pilyso-io-omero

Plugin for pilyso-io, allowing for access of image data stored on OMERO image storage servers.

Load the module using the PILYSO_IO_MODULES environment variable:

> PILYSO_IO_MODULES=omero python yourscript.py

Adds the omero:// and omeros:// schemes:

ims = ImageStack("omero://username:password@server.example.com/image/123")

# or

ims = ImageStack("omero://username:password@server.example.com/dataset/456")

If you do not want to type in the OMERO username or password into the console, the environment variables OMERO_USER or OMERO_PASSWORD can be used, respectively.

License

By importing omero, GPL.