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mkoeppe
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### 📚 Description Trac branch `u/gh-collares/gap-gc` from sagemath#34701, now migrated to GitHub. Currently based atop sagemath#35093; will rebase once that is merged. The rest of the description below is copied from sagemath#34701: A refactor in sagemath#27946 introduced "unprotected" (not surrounded by `GAP_Enter`/`GAP_Leave`) `GAP_ValueGlobalVariable` calls. I believe this might be a GC hazard, because after updating to GAP 4.12.1 I started seeing aarch64 crashes on NixOS infrastructure such as: ``` #0 0x0000fffff79740e8 in wait4 () #1 0x0000fffff5dc6b78 in print_enhanced_backtrace () #2 0x0000fffff5dc8190 in sigdie () #3 0x0000fffff5dcb1c0 in cysigs_signal_handler () #4 0x0000fffff7ffb7cc in __kernel_rt_sigreturn () #5 0x0000ffff99a0bf28 in ConvString () #6 0x0000000000000000 in ?? () #7 0x0000000000000000 in ?? () #8 0x0000000000000000 in ?? () #9 0x0000ffff99989930 in Pr () #10 0x0000ffff9998aa18 in CloseOutput () #11 0x0000ffff99884828 in capture_stdout () at /build/sage- src-9.7/pkgs/sagemath-standard/sage/libs/gap/element.pyx:154 ... ``` I also see cases where `capture_stdout` throws errors such as `sage.libs.gap.util.GAPError: Error, Length: <list> must be a list (not the integer 255)` and then crashes. Both types of errors are fixed by this ticket. Note that I am nesting `GAP_Enter`/`GAP_Leave` calls because I didn't remove the preexisting calls inside `capture_stdout`. That's because I feared removing the innermost calls might create a new footgun (and I believe nested `GAP_Enter`/`GAP_Leave` calls are explicitly supported), but removing them should cause no problem. Removing them might even be preferable for performance reasons, I don't know. Fixes sagemath#34701 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> <!-- If your change requires a documentation PR, please link it appropriately --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> - [x] I have made sure that the title is self-explanatory and the description concisely explains the PR. - [x] I have linked an issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open pull requests that this PR logically depends on --> <!-- - #xyz: short description why this is a dependency - #abc: ... --> - sagemath#35093: GAP 4.12.2 upgrade, which touches the same function and should land first. URL: sagemath#35114 Reported by: Mauricio Collares Reviewer(s): Dima Pasechnik
mkoeppe
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mkoeppe
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Added the covering array file to documentation, fixed a couple format…
mkoeppe
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….0 to 0.2.0
Bumps [dev-hanz-ops/install-gh-cli-action](https://github.com/dev-hanz-
ops/install-gh-cli-action) from 0.1.0 to 0.2.0.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a href="https://github.com/dev-hanz-ops/install-gh-
cli-action/releases">dev-hanz-ops/install-gh-cli-action's
releases</a>.</em></p>
<blockquote>
<h2>v0.2.0 - update to node20</h2>
<ul>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/8fff9050dae2d81b38f94500d8b74ad1d1d47410">https://github.com/dev-hanz-
ops/install-gh-cli-
action/commit/8fff9050dae2d81b38f94500d8b74ad1d1d47410</a> (update to
node20)</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/8fff9050dae2d81b38f94500d8b74ad1d1d47410"><code>8fff905</code></a>
update to node 20</li>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/67bfd0539397d168c77ba70eac2647fef7f1f020"><code>67bfd05</code></a>
README: only linux amd64</li>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/44745680363a7ba976f907c6d1b697a9fc311cf7"><code>4474568</code></a>
Update readme with working example (<a
href="https://redirect.github.com/dev-hanz-ops/install-gh-cli-
action/issues/3">#3</a>)</li>
<li>See full diff in <a href="https://github.com/dev-hanz-ops/install-
gh-cli-action/compare/v0.1.0...v0.2.0">compare view</a></li>
</ul>
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URL: sagemath#37945
Reported by: dependabot[bot]
Reviewer(s):
mkoeppe
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….0 to 0.2.0
Bumps [dev-hanz-ops/install-gh-cli-action](https://github.com/dev-hanz-
ops/install-gh-cli-action) from 0.1.0 to 0.2.0.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a href="https://github.com/dev-hanz-ops/install-gh-
cli-action/releases">dev-hanz-ops/install-gh-cli-action's
releases</a>.</em></p>
<blockquote>
<h2>v0.2.0 - update to node20</h2>
<ul>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/8fff9050dae2d81b38f94500d8b74ad1d1d47410">https://github.com/dev-hanz-
ops/install-gh-cli-
action/commit/8fff9050dae2d81b38f94500d8b74ad1d1d47410</a> (update to
node20)</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/8fff9050dae2d81b38f94500d8b74ad1d1d47410"><code>8fff905</code></a>
update to node 20</li>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/67bfd0539397d168c77ba70eac2647fef7f1f020"><code>67bfd05</code></a>
README: only linux amd64</li>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/44745680363a7ba976f907c6d1b697a9fc311cf7"><code>4474568</code></a>
Update readme with working example (<a
href="https://redirect.github.com/dev-hanz-ops/install-gh-cli-
action/issues/3">#3</a>)</li>
<li>See full diff in <a href="https://github.com/dev-hanz-ops/install-
gh-cli-action/compare/v0.1.0...v0.2.0">compare view</a></li>
</ul>
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Dependabot will resolve any conflicts with this PR as long as you don't
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</details>
URL: sagemath#37945
Reported by: dependabot[bot]
Reviewer(s):
mkoeppe
pushed a commit
that referenced
this pull request
Jun 8, 2024
….0 to 0.2.0
Bumps [dev-hanz-ops/install-gh-cli-action](https://github.com/dev-hanz-
ops/install-gh-cli-action) from 0.1.0 to 0.2.0.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a href="https://github.com/dev-hanz-ops/install-gh-
cli-action/releases">dev-hanz-ops/install-gh-cli-action's
releases</a>.</em></p>
<blockquote>
<h2>v0.2.0 - update to node20</h2>
<ul>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/8fff9050dae2d81b38f94500d8b74ad1d1d47410">https://github.com/dev-hanz-
ops/install-gh-cli-
action/commit/8fff9050dae2d81b38f94500d8b74ad1d1d47410</a> (update to
node20)</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/8fff9050dae2d81b38f94500d8b74ad1d1d47410"><code>8fff905</code></a>
update to node 20</li>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/67bfd0539397d168c77ba70eac2647fef7f1f020"><code>67bfd05</code></a>
README: only linux amd64</li>
<li><a href="https://github.com/dev-hanz-ops/install-gh-cli-action/commi
t/44745680363a7ba976f907c6d1b697a9fc311cf7"><code>4474568</code></a>
Update readme with working example (<a
href="https://redirect.github.com/dev-hanz-ops/install-gh-cli-
action/issues/3">#3</a>)</li>
<li>See full diff in <a href="https://github.com/dev-hanz-ops/install-
gh-cli-action/compare/v0.1.0...v0.2.0">compare view</a></li>
</ul>
</details>
<br />
[](https://docs.github.com/en/github/managing-security-
vulnerabilities/about-dependabot-security-updates#about-compatibility-
scores)
Dependabot will resolve any conflicts with this PR as long as you don't
alter it yourself. You can also trigger a rebase manually by commenting
`@dependabot rebase`.
[//]: # (dependabot-automerge-start)
[//]: # (dependabot-automerge-end)
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You can trigger Dependabot actions by commenting on this PR:
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</details>
URL: sagemath#37945
Reported by: dependabot[bot]
Reviewer(s):
mkoeppe
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that referenced
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Aug 3, 2024
Remove excessive blank lines around INPUT, OUTPUT, EXAMPLES, and before docstring ending """. (#3)
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I missed checking the documentation. Fixes included.