Studying genomic epidemiology of SARS-CoV-2: scripts and notebooks from my NSERC-CREATE internship with Andrew Page's group at the Quadram Institute in Norwich, England, 2022.
The COG-UK data (sequences, metadata and Newick tree) can be found at https://www.cogconsortium.uk/priority-areas/data-linkage-analysis/public-data-analysis/.