Turtle File Quality Control #32

	name: Turtle File Quality Control

	on:
	push:
	paths:
	- 'data/**'
	workflow_dispatch:
	workflow_run:
	workflows: [RDF Generation]
	types:
	- completed

	jobs:
	quality-control:
	runs-on: ubuntu-latest

	steps:
	# Step 1: Check out the repository
	- name: Checkout Repository
	uses: actions/checkout@v4

	# Step 2: Set up Python
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.9'

	# Step 3: Install RDFLib
	- name: Install RDFLib
	run: pip install rdflib

	# Step 4: Create Validation Script
	- name: Create Validation Script
	run: \|
	echo "
	import sys
	from rdflib import Graph

	def validate_turtle(file_path):
	try:
	g = Graph()
	g.parse(file_path, format='turtle')
	print(f'File {file_path} is valid.')
	return True
	except Exception as e:
	print(f'Error in {file_path}: {e}', file=sys.stderr)
	return False

	if __name__ == '__main__':
	files = sys.argv[1:]
	all_valid = all(validate_turtle(file) for file in files)

	with open('qc-status.txt', 'w') as f:
	f.write('valid' if all_valid else 'not valid')

	if not all_valid:
	sys.exit(1)
	" > validate_ttl.py

	# Step 5: Validate Turtle Files and Write QC Status
	- name: Run Turtle Validation
	run: python validate_ttl.py data/AOPWikiRDF.ttl data/AOPWikiRDF-Genes.ttl data/AOPWikiRDF-Void.ttl

	# Step 6: Upload QC Status File
	- name: Upload QC Status
	uses: actions/upload-artifact@v4
	with:
	name: qc-status
	path: qc-status.txt
	retention-days: 7

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