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@logsdon-lab

Logsdon Lab

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  1. CenMAP CenMAP Public

    Centromere mapping and annotation pipeline

    Python 9

  2. NucFlag NucFlag Public

    Misassembly Identifier

    Python 2

  3. Snakemake-ONT-Basecalling Snakemake-ONT-Basecalling Public

    Snakemake workflow to basecall ONT reads with dorado.

    Python 1

  4. CenPlot CenPlot Public

    Centromere plotting library

    Python 1

  5. .github .github Public

  6. lpc-resources lpc-resources Public

    Resources for getting started on the LPC.

Repositories

Showing 10 of 19 repositories
  • Snakemake-Assembly Public

    Workflow to generate hifiasm and verkko assemblies.

    Python 0 0 0 0 Updated Mar 28, 2025
  • CenPlot Public

    Centromere plotting library

    Python 1 MIT 0 3 0 Updated Mar 25, 2025
  • Snakemake-ONT-Basecalling Public

    Snakemake workflow to basecall ONT reads with dorado.

    Python 1 0 1 0 Updated Mar 19, 2025
  • CDR-Finder Public Forked from EichlerLab/CDR-Finder

    Workflow to identify the centromere dip regions (CDR) from methyl BAMs

    Python 0 1 0 0 Updated Mar 13, 2025
  • NucFlag Public

    Misassembly Identifier

    Python 2 MIT 0 7 (2 issues need help) 0 Updated Mar 12, 2025
  • 1DModDotplot Public
    Python 0 0 0 0 Updated Mar 11, 2025
  • CenMAP Public

    Centromere mapping and annotation pipeline

    Python 9 MIT 0 11 (1 issue needs help) 1 Updated Mar 11, 2025
  • Snakemake-NucFlag Public

    Workflow to map PacBio HiFi reads back to an assembly and check for misassemblies at specific regions via NucFlag.

    Python 0 1 1 0 Updated Feb 15, 2025
  • misasim Public

    Misassembly simulator

    Rust 0 0 1 0 Updated Feb 13, 2025
  • Snakemake-HumAS-SD Public

    Workflow to use stringdecomposer to annotate alpha-satellite HOR monomers.

    Python 0 0 0 0 Updated Feb 12, 2025
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